Ss1.1-rece38_h17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCAGCCCCGGCGCCGACTTCTTCCTGCTCAAGTGCGAAGGTCCTGGGGTCCCCACGGTG ACTGTGCACAACACGACCGATAGGAAAAAAATGTTTGACCTGGAGACAAACGAGCACGTA CAGAAGGCCGTAAACGACCGACAGATGCCCAAAGTGGAGTACAGGAAAATCGAGATTGAC GATTACCACTTGCCCGTTCAGATCCTCAAGCCTGCAACCTTCACCGACACTGCCCACTAC CCCCTGCTCCTGGTGGTGGACGGCACCCCGGGGAGCCAGAGCGTGGCTGAGAAGTTCGAG GTGACCTGGGAGACGGTGATGGTGAGCAGCCACGGAGCCGTGGTGGTGAAGTGTGACGGC CGGGGTAGTGGCTTCCAAGGGACCAAGCTCCTGCATGAAGTCAGACGGAAGCTGGGCTTG CTGGAGGAGAAGGACCAGGTGGAGGCTGTGCGGATGATGCTCAAAGAGCAGTACATCGAT AAAACCCGGGTGGCCGTGTTTGGGAAGGATTACGGCGGCTACCTGAGCACCTACATCCTC CCGGCCAAGGGCGAGAACCAAGGCCAGATCTTCAGCTGCGGCTGCGCCCTCTCCCCAATA ACAGACTTCAAGCTCTACGCGTCTGCATTTTCCGAGAGGTACCTGGGCCTCCACGGACTT GACAACAGAGCGTACGAGATGGCCAGGGTGGCACCCCGGGTGTCGGCGCTGGAAGGGCAG CAGCTCCTGATTATCCACGCGACCGCCGACGAAAAGATCCATTTCCAGCACACAGCAGAA CTCATCACACAGCTCATCAAGGGAAAGGCTAATTACAGCTTACAGATATACCCCGACGAA AGCCATTACTTCAACAGCGCCTCCCTCCAGCACCACCTCTACCGGTCTCTCACCAACTTC TTCGTGGAGTGTTTCAGGATCCAGGACAAGCTCCCCACGGTCACGGCCAAAGAGGACGAG GAGGAGGACTGACCAGCCCGGCCCAAGCCCAGCCTGGCTCTTCCTGGAACAGCGGACCCC GGCCTGGAGCCCCCCCCCCTCCCCGACCCCTGCAGACACCTGGGGCGGGGGCAGGAAGCG TCACCTTCATAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCAGCCCCGGCGCCGACTTCTTCCTGCTCAAGTGCGAAGGTCCTGGGGTCCCCACGGTG ACTGTGCACAACACGACCGATAGGAAAAAAATGTTTGACCTGGAGACAAACGAGCACGTA CAGAAGGCCGTAAACGACCGACAGATGCCCAAAGTGGAGTACAGGAAAATCGAGATTGAC GATTACCACTTGCCCGTTCAGATCCTCAAGCCTGCAACCTTCACCGACACTGCCCACTAC CCCCTGCTCCTGGTGGTGGACGGCACCCCGGGGAGCCAGAGCGTGGCTGAGAAGTTCGAG GTGACCTGGGAGACGGTGATGGTGAGCAGCCACGGAGCCGTGGTGGTGAAGTGTGACGGC CGGGGTAGTGGCTTCCAAGGGACCAAGCTCCTGCATGAAGTCAGACGGAAGCTGGGCTTG CTGGAGGAGAAGGACCAGGTGGAGGCTGTGCGGATGATGCTCAAAGAGCAGTACATCGAT AAAACCCGGGTGGCCGTGTTTGGGAAGGATTACGGCGGCTACCTGAGCACCTACATCCTC CCGGCCAAGGGCGAGAACCAAGGCCAGATCTTCAGCTGCGGCTGCGCCCTCTCCCCAATA ACAGACTTCAAGCTCTACGCGTCTGCATTTTCCGAGAGGTACCTGGGCCTCCACGGACTT GACAACAGAGCGTACGAGATGGCCAGGGTGGCACCCCGGGTGTCGGCGCTGGAAGGGCAG CAGCTCCTGATTATCCACGCGACCGCCGACGAAAAGATCCATTTCCAGCACACAGCAGAA CTCATCACACAGCTCATCAAGGGAAAGGCTAATTACAGCTTACAGATATACCCCGACGAA AGCCATTACTTCAACAGCGCCTCCCTCCAGCACCACCTCTACCGGTCTCTCACCAACTTC TTCGTGGAGTGTTTCAGGATCCAGGACAAGCTCCCCACGGTCACGGCCAAAGAGGACGAG GAGGAGGACTGACCAGCCCGGCCCAAGCCCAGCCTGGCTCTTCCTGGAACAGCGGACCCC GGCCTGGAGCCCCCCCCCCTCCCCGACCCCTGCAGACACCTGGGGCGGGGGCAGGAAGCG TCACCTTCATAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 336-453, + strand, RNAz p=0.998759 | |
| 337-453, + strand, RNAz p=0.999288 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 336-453, + strand, RNAz p=0.998759 | |
| 337-453, + strand, RNAz p=0.999288 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 258-453, gnl|bosTau2|chr4 (68200255-68200060) | |
| 258-453, gnl|canFam2|chr16 (20980061-20980226) | |
| 258-453, gnl|danRer3|chrUn (102050466-102050618) | |
| 258-453, gnl|dasNov1|scaffold_116207 (2286-2454) | |
| 258-453, gnl|echTel1|scaffold_260248 (2923-2756) | |
| 258-453, gnl|fr1|chrUn (9706432-9706276) | |
| 258-453, gnl|galGal2|chr2 (7075588-7075740) | |
| 258-453, gnl|hg17|chr7 (154105246-154105411) | |
| 258-453, gnl|Hg17|chr7 (154105264-154105459) | |
| 258-453, gnl|loxAfr1|scaffold_10747 (52024-52191) | |
| 258-453, gnl|mm7|chr5 (26746811-26746974) | |
| 258-453, gnl|Mm7|chr5 (26746827-26747022) | |
| 258-453, gnl|monDom2|scaffold_7 (16239040-16239205) | |
| 258-453, gnl|oryCun1|scaffold_177620 (12557-12389) | |
| 258-453, gnl|rheMac2|chr3 (191961315-191961480) | |
| 258-453, gnl|rn3|chr4 (2863268-2863105) | |
| 258-453, gnl|tetNig1|chr15 (6376831-6376676) | |
| 258-453, gnl|xenTro1|scaffold_57 (1745674-1745832) | |
| 506-617, gnl|bosTau2|chr4 (68187559-68187448) | |
| 506-617, gnl|Hg17|chr7 (154114989-154115100) | |
| 506-617, gnl|Mm7|chr5 (26753498-26753609) | |
| 819-1035, gnl|bosTau2|chr4 (68183966-68183755) | |
| 819-1035, gnl|canFam2|chr16 (20994607-20994793) | |
| 819-1035, gnl|danRer3|chrUn (102068468-102068641) | |
| 819-1035, gnl|fr1|chrUn (9704597-9704445) | |
| 819-1035, gnl|galGal2|chr2 (7082582-7082749) | |
| 819-1035, gnl|hg17|chr7 (154121654-154121841) | |
| 819-1035, gnl|Hg17|chr7 (154121685-154121901) | |
| 819-1035, gnl|loxAfr1|scaffold_116746 (1050-863) | |
| 819-1035, gnl|mm7|chr5 (26758022-26758209) | |
| 819-1035, gnl|Mm7|chr5 (26758051-26758270) | |
| 819-1035, gnl|monDom2|scaffold_7 (16264498-16264674) | |
| 819-1035, gnl|oryCun1|scaffold_138525 (3783-3967) | |
| 819-1035, gnl|panTro1|chr6 (156963705-156963892) | |
| 819-1035, gnl|rheMac2|chr3 (191976104-191976291) | |
| 819-1035, gnl|rn3|chr4 (2853706-2853520) | |
| 819-1035, gnl|tetNig1|chr15 (6375487-6375333) | |
| 819-1035, gnl|xenTro1|scaffold_57 (1756212-1756374) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 258-453, gnl|bosTau2|chr4 (68200255-68200060) | |
| 258-453, gnl|canFam2|chr16 (20980061-20980226) | |
| 258-453, gnl|danRer3|chrUn (102050466-102050618) | |
| 258-453, gnl|dasNov1|scaffold_116207 (2286-2454) | |
| 258-453, gnl|echTel1|scaffold_260248 (2923-2756) | |
| 258-453, gnl|fr1|chrUn (9706432-9706276) | |
| 258-453, gnl|galGal2|chr2 (7075588-7075740) | |
| 258-453, gnl|hg17|chr7 (154105246-154105411) | |
| 258-453, gnl|Hg17|chr7 (154105264-154105459) | |
| 258-453, gnl|loxAfr1|scaffold_10747 (52024-52191) | |
| 258-453, gnl|mm7|chr5 (26746811-26746974) | |
| 258-453, gnl|Mm7|chr5 (26746827-26747022) | |
| 258-453, gnl|monDom2|scaffold_7 (16239040-16239205) | |
| 258-453, gnl|oryCun1|scaffold_177620 (12557-12389) | |
| 258-453, gnl|rheMac2|chr3 (191961315-191961480) | |
| 258-453, gnl|rn3|chr4 (2863268-2863105) | |
| 258-453, gnl|tetNig1|chr15 (6376831-6376676) | |
| 258-453, gnl|xenTro1|scaffold_57 (1745674-1745832) | |
| 506-617, gnl|bosTau2|chr4 (68187559-68187448) | |
| 506-617, gnl|Hg17|chr7 (154114989-154115100) | |
| 506-617, gnl|Mm7|chr5 (26753498-26753609) | |
| 819-1035, gnl|bosTau2|chr4 (68183966-68183755) | |
| 819-1035, gnl|canFam2|chr16 (20994607-20994793) | |
| 819-1035, gnl|danRer3|chrUn (102068468-102068641) | |
| 819-1035, gnl|fr1|chrUn (9704597-9704445) | |
| 819-1035, gnl|galGal2|chr2 (7082582-7082749) | |
| 819-1035, gnl|hg17|chr7 (154121654-154121841) | |
| 819-1035, gnl|Hg17|chr7 (154121685-154121901) | |
| 819-1035, gnl|loxAfr1|scaffold_116746 (1050-863) | |
| 819-1035, gnl|mm7|chr5 (26758022-26758209) | |
| 819-1035, gnl|Mm7|chr5 (26758051-26758270) | |
| 819-1035, gnl|monDom2|scaffold_7 (16264498-16264674) | |
| 819-1035, gnl|oryCun1|scaffold_138525 (3783-3967) | |
| 819-1035, gnl|panTro1|chr6 (156963705-156963892) | |
| 819-1035, gnl|rheMac2|chr3 (191976104-191976291) | |
| 819-1035, gnl|rn3|chr4 (2853706-2853520) | |
| 819-1035, gnl|tetNig1|chr15 (6375487-6375333) | |
| 819-1035, gnl|xenTro1|scaffold_57 (1756212-1756374) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| fhi (0.169578) |