Non-Coding RNA Search

Ss1.1-rece38_k10.5

Sequence:


               
               GCTCCTCCAGCACATCACACACACATGCCAGCGTGGAGAGCGCCCCTCCCCTCCAGCCCT
CAGCCACCTTCTCCACGGCAGCCACCTCTGCCTCGAGTGCCACGTCCTCAGGGCTCAGCC
TGCCGAGCAACATGAACACAGTGAGCAGCCTCTGCCTGGGCGCCACCGCCGCCAGTGCCC
CCAGCAGCAGTACCAGGGCCACGCCCTTGGTGACCTCAGGCAAAGCACCCCCCAACTTGC
CCCAGGGGGTGCCTCCCCTGCTGCACAACCAGTACCTCGTGGGCCCTGGAGGACTGCTTC
CTGCCTACCCGATTTACGGCTATGACGAGCTCCAGATGCTGCAGTCCCGGCTGCCAATGG
ATTACTATGGGATTCCTTTTGCCACACCGCCAGCCCTGGCCAGTCGAGATGGGAGCCTCA
CTAATAACCCATATTCAGGTGATGTCACAAAGTTTGGCCGAGGTGACTCTGCATCCCCTG
CACCTGCCACCACGCTGGCTCAGCCTCAGCAGAGCCAGTCCCAGGCCCACCACACAGCCC
AGCAGCCCTTTCTGAATCCTGCGCTGCCCCCTGGCTACAGCTACACCGGCCTCCCCTACT
ACGCGGGAGTGCCCAGTGCCTTCCAGTATGGGCCCACCATGTTTGAGTGTCGGCGTCTTC
AAGCACCACTGGCCTCCCTGATATGACAGGTTCTGTCTACAACAAGACTCAGACTTTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCTCCAGCACATCACACACACATGCCAGCGTGGAGAGCGCCCCTCCCCTCCAGCCCT
CAGCCACCTTCTCCACGGCAGCCACCTCTGCCTCGAGTGCCACGTCCTCAGGGCTCAGCC
TGCCGAGCAACATGAACACAGTGAGCAGCCTCTGCCTGGGCGCCACCGCCGCCAGTGCCC
CCAGCAGCAGTACCAGGGCCACGCCCTTGGTGACCTCAGGCAAAGCACCCCCCAACTTGC
CCCAGGGGGTGCCTCCCCTGCTGCACAACCAGTACCTCGTGGGCCCTGGAGGACTGCTTC
CTGCCTACCCGATTTACGGCTATGACGAGCTCCAGATGCTGCAGTCCCGGCTGCCAATGG
ATTACTATGGGATTCCTTTTGCCACACCGCCAGCCCTGGCCAGTCGAGATGGGAGCCTCA
CTAATAACCCATATTCAGGTGATGTCACAAAGTTTGGCCGAGGTGACTCTGCATCCCCTG
CACCTGCCACCACGCTGGCTCAGCCTCAGCAGAGCCAGTCCCAGGCCCACCACACAGCCC
AGCAGCCCTTTCTGAATCCTGCGCTGCCCCCTGGCTACAGCTACACCGGCCTCCCCTACT
ACGCGGGAGTGCCCAGTGCCTTCCAGTATGGGCCCACCATGTTTGAGTGTCGGCGTCTTC
AAGCACCACTGGCCTCCCTGATATGACAGGTTCTGTCTACAACAAGACTCAGACTTTTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37778646|gb|AAP21488.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37778646|gb|AAP21488.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               477-636, - strand, RNAz p=0.962866

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               477-636, - strand, RNAz p=0.962866

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               24-220, gnl|bosTau2|chr8 (38069023-38068827)
               

               
               24-220, gnl|Hg17|chr9 (33917990-33917794)
               

               
               24-220, gnl|Mm7|chr4 (41338365-41338178)
               


               
               437-650, gnl|bosTau2|chr8 (38065281-38065068)
               

               
               437-650, gnl|Hg17|chr9 (33914000-33913787)
               

               
               437-650, gnl|Mm7|chr4 (41334998-41334785)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-220, gnl|bosTau2|chr8 (38069023-38068827)
               

               
               24-220, gnl|Hg17|chr9 (33917990-33917794)
               

               
               24-220, gnl|Mm7|chr4 (41338365-41338178)
               


               
               437-650, gnl|bosTau2|chr8 (38065281-38065068)
               

               
               437-650, gnl|Hg17|chr9 (33914000-33913787)
               

               
               437-650, gnl|Mm7|chr4 (41334998-41334785)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	24-220, gnl\|bosTau2\|chr8 (38069023-38068827)
	24-220, gnl\|Hg17\|chr9 (33917990-33917794)
	24-220, gnl\|Mm7\|chr4 (41338365-41338178)

	437-650, gnl\|bosTau2\|chr8 (38065281-38065068)
	437-650, gnl\|Hg17\|chr9 (33914000-33913787)
	437-650, gnl\|Mm7\|chr4 (41334998-41334785)