Non-Coding RNA Search

Ss1.1-rece38_o11.5

Sequence:


               
               AATATCCAAACCAATCCATCCACAGCTGTTTCTGGGGTGGTTTTTAAAGGAGCTGCAACA
GAAGGATGAGGCTTTCCCTTTTTACCAAAAAATAAAAGCATAAAAAAAAATCTGTGCAGC
CAATGACTATCTTTTATGTAGAAAAAGCAAAATGGATATTTTATTCATCCTTTTAGTAAA
CAGACAAACTTTTCTCAACATTTGTACAGTTCTGAAAAAATCTTGGTCACCAAAAATGTT
TTATCTGTGAATTTAGCAATTGCTAGGCTCCAGTTAGGGGGGCTGGGGTCTCACTTTCTT
CCAGAAATGTGAGTTTCACTGGAAGTGAAGGGGCAGGAATGACTGGACTGTCCACCACGC
CAGCCCTATCCACCTGTGGTTCTGGCCAGGGAGCAAGCCGGGAAGTGCCCTGGCACCTGC
ACAGATTGATCCTTTGCTTGAGTTTCATGTGGAAAACAGATGCTTAGAATTGTAGACTAC
CACGCAACGGGAAAGGCTTAATATCTACTCCAATGGGTTTCCAGTTCAGTTTGAAGTCAA
TCGAATTTTTGTATTTTCAGTGTCTCCTTGATTGGTTTTGCTAGTAATTCTGTAAATTGT
ACATTTGCAATATGAGGTTTTTTTCCTTTTGTACAATTTGAAACTGATGCTTCACCTTTC
CTTTAATAAACTATTCAAAATCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATCCAAACCAATCCATCCACAGCTGTTTCTGGGGTGGTTTTTAAAGGAGCTGCAACA
GAAGGATGAGGCTTTCCCTTTTTACCAAAAAATAAAAGCATAAAAAAAAATCTGTGCAGC
CAATGACTATCTTTTATGTAGAAAAAGCAAAATGGATATTTTATTCATCCTTTTAGTAAA
CAGACAAACTTTTCTCAACATTTGTACAGTTCTGAAAAAATCTTGGTCACCAAAAATGTT
TTATCTGTGAATTTAGCAATTGCTAGGCTCCAGTTAGGGGGGCTGGGGTCTCACTTTCTT
CCAGAAATGTGAGTTTCACTGGAAGTGAAGGGGCAGGAATGACTGGACTGTCCACCACGC
CAGCCCTATCCACCTGTGGTTCTGGCCAGGGAGCAAGCCGGGAAGTGCCCTGGCACCTGC
ACAGATTGATCCTTTGCTTGAGTTTCATGTGGAAAACAGATGCTTAGAATTGTAGACTAC
CACGCAACGGGAAAGGCTTAATATCTACTCCAATGGGTTTCCAGTTCAGTTTGAAGTCAA
TCGAATTTTTGTATTTTCAGTGTCTCCTTGATTGGTTTTGCTAGTAATTCTGTAAATTGT
ACATTTGCAATATGAGGTTTTTTTCCTTTTGTACAATTTGAAACTGATGCTTCACCTTTC
CTTTAATAAACTATTCAAAATCAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               213-376, + strand, RNAz p=0.854573
               

               
               549-666, + strand, RNAz p=0.575526

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-376, + strand, RNAz p=0.854573
               

               
               549-666, + strand, RNAz p=0.575526

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of BC064699, +
               

               
               5' of BC064699, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC064699, +
               

               
               5' of BC064699, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-376, gnl|bosTau2|chr1 (85760244-85760620)
               

               
               1-376, gnl|Hg17|chr3 (137538471-137538046)
               

               
               1-376, gnl|Mm7|chr9 (100600839-100601262)
               


               
               407-683, gnl|bosTau2|chr1 (85760608-85760891)
               

               
               407-683, gnl|Hg17|chr3 (137538058-137537776)
               

               
               407-683, gnl|Mm7|chr9 (100601205-100601538)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-376, gnl|bosTau2|chr1 (85760244-85760620)
               

               
               1-376, gnl|Hg17|chr3 (137538471-137538046)
               

               
               1-376, gnl|Mm7|chr9 (100600839-100601262)
               


               
               407-683, gnl|bosTau2|chr1 (85760608-85760891)
               

               
               407-683, gnl|Hg17|chr3 (137538058-137537776)
               

               
               407-683, gnl|Mm7|chr9 (100601205-100601538)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ldo (0.0970026)

	213-376, + strand, RNAz p=0.854573
	549-666, + strand, RNAz p=0.575526

	1-376, gnl\|bosTau2\|chr1 (85760244-85760620)
	1-376, gnl\|Hg17\|chr3 (137538471-137538046)
	1-376, gnl\|Mm7\|chr9 (100600839-100601262)

	407-683, gnl\|bosTau2\|chr1 (85760608-85760891)
	407-683, gnl\|Hg17\|chr3 (137538058-137537776)
	407-683, gnl\|Mm7\|chr9 (100601205-100601538)

	mgp (0.230681)
	ece (0.229305)
	eye (0.170503)
	che (0.136314)
	lyg (0.133103)
	ova (0.129132)
	ese (0.126502)
	bla (0.124347)
	eru (0.120048)
	ldo (0.0970026)