Non-Coding RNA Search

Ss1.1-rece39_c14.5

Sequence:


               
               CCCATCCTGTGTCCTCTCCAGCTGTGCCCCTAAGCCGAGCCCCCTGAGGGCTGGGGACCA
GCTGGCCACATGGTGCTGCTTTTCGGGTTAGAGGAGGGGTGGCCCTGAGAGACAGCCCAG
CTCTAAGCCTCTAACAGCTGATCACTGCCAGGGAGGCTCAGGGTGCCGTGGCCAGGTGGC
TTCTGGCCGTGTCAAGACCAGGCTTCCTTCCCTACCGTGGAGCAGTCCAGTAGGTCTTTG
GCGGCCTTAGCCTCCCTTCCTACACTCCTGCAGCCCCAGGAGCAACCCCCTTGGGCTATG
CCTGACCCCGGGTCACATTCTGCAAGGGGCTGACTGGTGCCTGGTCTGCAGCCGCTGTTG
GAGCTAGTGAGGCAGAGCAGGCTCAGTCAGGCCTCTGTGCTGGCGAAGCCCACGGCCTGG
GCCAGCCACTCTCCCCACAGGCCTCAGTCGGGTCCTCAAGCCATTGTATGTTGCATGTTT
GGGACAGTGGTCCCTGCTCTCTTGTGCTCGAGAAGTCGACGTTACTTCTGGCCTGCCATC
CTGTCCTGCCCTCACTGCCCCCACTGATGTGCCACGTGGGTGTCAGGTGTCTCAGACACA
GTATTCAGCAGCCACCAGGAGGAAACCTCCCTCTTCCCACCATCTGGGGACTGAGGTCAG
AAACAAGCCTCCACTCAAGACCCCTCTTCCTCGTTGACAGGCAAGGCGTGTGCCTGCGAG
CGCATGCAGTAGGGAGGGGCCAGCTCTGTGCCCCTCCTTCCCTTGGCTTTGCTCTTGCCG
GTGTCGGTGACCACCGTCCGTGCTGCCTTCTTGAACAGCAACTCCCCTCCCCCCACCCCT
TCACCAAAGGTCTTGGTACAACCAGCGGCCCATTTTGTGAAGTTTTTATGTAGACTAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCATCCTGTGTCCTCTCCAGCTGTGCCCCTAAGCCGAGCCCCCTGAGGGCTGGGGACCA
GCTGGCCACATGGTGCTGCTTTTCGGGTTAGAGGAGGGGTGGCCCTGAGAGACAGCCCAG
CTCTAAGCCTCTAACAGCTGATCACTGCCAGGGAGGCTCAGGGTGCCGTGGCCAGGTGGC
TTCTGGCCGTGTCAAGACCAGGCTTCCTTCCCTACCGTGGAGCAGTCCAGTAGGTCTTTG
GCGGCCTTAGCCTCCCTTCCTACACTCCTGCAGCCCCAGGAGCAACCCCCTTGGGCTATG
CCTGACCCCGGGTCACATTCTGCAAGGGGCTGACTGGTGCCTGGTCTGCAGCCGCTGTTG
GAGCTAGTGAGGCAGAGCAGGCTCAGTCAGGCCTCTGTGCTGGCGAAGCCCACGGCCTGG
GCCAGCCACTCTCCCCACAGGCCTCAGTCGGGTCCTCAAGCCATTGTATGTTGCATGTTT
GGGACAGTGGTCCCTGCTCTCTTGTGCTCGAGAAGTCGACGTTACTTCTGGCCTGCCATC
CTGTCCTGCCCTCACTGCCCCCACTGATGTGCCACGTGGGTGTCAGGTGTCTCAGACACA
GTATTCAGCAGCCACCAGGAGGAAACCTCCCTCTTCCCACCATCTGGGGACTGAGGTCAG
AAACAAGCCTCCACTCAAGACCCCTCTTCCTCGTTGACAGGCAAGGCGTGTGCCTGCGAG
CGCATGCAGTAGGGAGGGGCCAGCTCTGTGCCCCTCCTTCCCTTGGCTTTGCTCTTGCCG
GTGTCGGTGACCACCGTCCGTGCTGCCTTCTTGAACAGCAACTCCCCTCCCCCCACCCCT
TCACCAAAGGTCTTGGTACAACCAGCGGCCCATTTTGTGAAGTTTTTATGTAGACTAAAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               155-429, - strand, RNAz p=0.963711
               

               
               691-842, - strand, RNAz p=0.997415

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               155-429, - strand, RNAz p=0.963711
               

               
               691-842, - strand, RNAz p=0.997415

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               333-406, + strand, RNAmicro p=0.999994

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               333-406, + strand, RNAmicro p=0.999994

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-900, gnl|bosTau2|chr25 (29977099-29976211)
               

               
               1-900, gnl|Hg17|chr7 (72559011-72558204)
               

               
               1-900, gnl|Mm7|chr5 (134021568-134022367)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-900, gnl|bosTau2|chr25 (29977099-29976211)
               

               
               1-900, gnl|Hg17|chr7 (72559011-72558204)
               

               
               1-900, gnl|Mm7|chr5 (134021568-134022367)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               ecc (0.115035)

	155-429, - strand, RNAz p=0.963711
	691-842, - strand, RNAz p=0.997415

	1-900, gnl\|bosTau2\|chr25 (29977099-29976211)
	1-900, gnl\|Hg17\|chr7 (72559011-72558204)
	1-900, gnl\|Mm7\|chr5 (134021568-134022367)