Non-Coding RNA Search

Ss1.1-rece39_e3.5

Sequence:


               
               TTAAATGTGACATTCTTAAAAAAGAAGAGAAAGAATTTTAAGAGTAGTAGGATATATGTC
TGTGCTCCCTAAAAGTTGTACTTCATTTCTTTTCCATACACTGTGTGCTATTTGTGTTAA
CATGGAAGAGGATTCATTGTTTTTATTTTATTTTTTTAATTTTTTCTTTTTTATTAAGCT
AGCATCTGCCCCAGTTGGTGTTCAAATAGCACTTGACTCTGCCTGTAATATCTGTATCTT
TTCTCTAATCAGAGATACAGAGGTTGAGTATAAAATAAACCTGCTCAGATAGGACAATTA
AGTGCACTGTACAATTTTCCCAGTTTACAGGTCTATACTTAAGGGAAAAGTTGCAAGAAT
GCTGAAAAAAATAATTTGAACACAATCTCATTGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAATGTGACATTCTTAAAAAAGAAGAGAAAGAATTTTAAGAGTAGTAGGATATATGTC
TGTGCTCCCTAAAAGTTGTACTTCATTTCTTTTCCATACACTGTGTGCTATTTGTGTTAA
CATGGAAGAGGATTCATTGTTTTTATTTTATTTTTTTAATTTTTTCTTTTTTATTAAGCT
AGCATCTGCCCCAGTTGGTGTTCAAATAGCACTTGACTCTGCCTGTAATATCTGTATCTT
TTCTCTAATCAGAGATACAGAGGTTGAGTATAAAATAAACCTGCTCAGATAGGACAATTA
AGTGCACTGTACAATTTTCCCAGTTTACAGGTCTATACTTAAGGGAAAAGTTGCAAGAAT
GCTGAAAAAAATAATTTGAACACAATCTCATTGATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               159-344, + strand, RNAz p=0.875962

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-344, + strand, RNAz p=0.875962

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               303-403, - strand, RNAmicro p=0.902543

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               303-403, - strand, RNAmicro p=0.902543

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AJ404611, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AJ404611, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-396, gnl|bosTau2|chr11 (29352006-29351597)
               

               
               1-396, gnl|Hg17|chr2 (60597812-60597418)
               

               
               1-396, gnl|Mm7|chr11 (24118552-24118955)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-396, gnl|bosTau2|chr11 (29352006-29351597)
               

               
               1-396, gnl|Hg17|chr2 (60597812-60597418)
               

               
               1-396, gnl|Mm7|chr11 (24118552-24118955)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ebs (0.118301)

	1-396, gnl\|bosTau2\|chr11 (29352006-29351597)
	1-396, gnl\|Hg17\|chr2 (60597812-60597418)
	1-396, gnl\|Mm7\|chr11 (24118552-24118955)