Non-Coding RNA Search

Ss1.1-rece39_f5.5

Sequence:


               
               TGAATACTTTAATATTTAGTTTTTACAGTGACTAAAGCCAAACCTACTTTTCATTTTAGC
AGCAAATTAAAGTCAGCAACCCTTATTTCTACAACTTAACGCAGACGAAAACCTGTGATA
TTTAAGAACTTTCTTTCTTCGTACAATAGAACAGAGAATTGCCCTAAAAGTTGCACAGGC
TCCAAGACTAAACAGATGGGTGCTCCATCGGAAAGAAAAAGGCGGCTTCTTGGTTCTCAG
CTGGTTTCAGTCAATTCTGTAAAGTCCCTCCCCCCCAAAGAAAAATTTAAAGTCAAGTCA
ATCAAAATTCCTCAGGCTGCACGCTTTTCACAAAACGCAGAAAACATTTAGGAATTAATT
AAACCAGGGGTGGGAGGAAGAGAAGGGGAAGTGAACTGTCAAGGGTGTTTCTGAAATGAA
AGGTGAGTAACCAGACAGCAAAGAAGGAGGGGAAGAATCCCCCATTGACAAGCTGTTGAT
AGAAATCGAGGTTCATGCTGTCCTCTCTGCCTCTACAAACTACTCTCTTTCCAGAATTCC
TAGGTCTCCAAGAGAATTCTGATGGTACTAGAGATTTGCTAAAGAACCAAAACATTGATT
ATCTGGCTGAAGGTAGGCATAGCTTTTACATCAAAAAGAGCAGATCACTTCCTTACAGGG
AGTTATATCAGAAAGCTAGCCTGGTTGGAAATCAGAGAATGGCTGATGTCTCTTTCATGG
AATGTGTGAAATAAGCTTAGCAATTTAACTAAATACAAATATATGCATTGTATAATCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAATACTTTAATATTTAGTTTTTACAGTGACTAAAGCCAAACCTACTTTTCATTTTAGC
AGCAAATTAAAGTCAGCAACCCTTATTTCTACAACTTAACGCAGACGAAAACCTGTGATA
TTTAAGAACTTTCTTTCTTCGTACAATAGAACAGAGAATTGCCCTAAAAGTTGCACAGGC
TCCAAGACTAAACAGATGGGTGCTCCATCGGAAAGAAAAAGGCGGCTTCTTGGTTCTCAG
CTGGTTTCAGTCAATTCTGTAAAGTCCCTCCCCCCCAAAGAAAAATTTAAAGTCAAGTCA
ATCAAAATTCCTCAGGCTGCACGCTTTTCACAAAACGCAGAAAACATTTAGGAATTAATT
AAACCAGGGGTGGGAGGAAGAGAAGGGGAAGTGAACTGTCAAGGGTGTTTCTGAAATGAA
AGGTGAGTAACCAGACAGCAAAGAAGGAGGGGAAGAATCCCCCATTGACAAGCTGTTGAT
AGAAATCGAGGTTCATGCTGTCCTCTCTGCCTCTACAAACTACTCTCTTTCCAGAATTCC
TAGGTCTCCAAGAGAATTCTGATGGTACTAGAGATTTGCTAAAGAACCAAAACATTGATT
ATCTGGCTGAAGGTAGGCATAGCTTTTACATCAAAAAGAGCAGATCACTTCCTTACAGGG
AGTTATATCAGAAAGCTAGCCTGGTTGGAAATCAGAGAATGGCTGATGTCTCTTTCATGG
AATGTGTGAAATAAGCTTAGCAATTTAACTAAATACAAATATATGCATTGTATAATCCAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-263, gnl|bosTau2|chr14 (12880511-12880779)
               

               
               1-263, gnl|Hg17|chr8 (59881824-59881559)
               

               
               1-263, gnl|Mm7|chr4 (6614522-6614265)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-263, gnl|bosTau2|chr14 (12880511-12880779)
               

               
               1-263, gnl|Hg17|chr8 (59881824-59881559)
               

               
               1-263, gnl|Mm7|chr4 (6614522-6614265)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tra (0.246184)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               eje (0.0988338)

	1-263, gnl\|bosTau2\|chr14 (12880511-12880779)
	1-263, gnl\|Hg17\|chr8 (59881824-59881559)
	1-263, gnl\|Mm7\|chr4 (6614522-6614265)