Ss1.1-rece39_k17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCTCGAGGGAAAAAGAAGAAAACAAATCTGAACCTGAGAAAGCCGAGGGAGAAGACG GAGAAAAAGAGGAAAAAGCCAAAGAAGACAAGGGTAAACAAAAATTGCGGCAGCTCCACA CACATCGATATGGAGAGCCAGAAGTTCCTGAGTCAGCATTCTGGAAGAAAATCATAGCCT ACCAACAGAAACTGCTAAACTATTTTGCTCGCAACTTTTACAACATGAGAATGTTAGCCT TATTTGTCGCATTTGCAATCAACTTCATCTTGCTTTTTTATAAGGTCTCCACTTCTTCTG TGGTTGAAGGAAAGGAGCTCCCCACACGCAGTTCAAGTGAAAATGCCAACTTTGGCAGCC TGGACAGCAGCTCGCCTAGAATCATTGCCGTCCACTATGTGCTAGAGGAGAGCAGTGGCT ACATGGAGCCCACACTGCGCATCTTGGCCATTCTGCACACGGTCATCTCCTTCTTCTGCA TCATTGGCTACTACTGCCTGAAGGTCCCACTGGTAATCTTTAAGCGAGAAAAGGAAGTAG CTCGAAAATTGGAATTTGATGGGCTTTATATTACAGAACAGCCTTCAGAAGATGATATTA AAGGCCAGTGGGATAGACTCGTAATCAACACACAGTCATTTCCCAACAACTACTGGGACA AATTTGTTAAAAGAAAGGTTATGGATAAATATGGAGAGTTCTATGGCCGAGACAGAATCA GTGAGTTACTTGGCATGGATAAAGCTGCCCTGGACTTCAGCGATGCCCGGGAAAAGAAGA AGCCTAAGAAGGACAGCTCCCTGTCAGCCGTACTGAACTCTATTGATGTGAAGTATCAGA TGTGGAAACTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCTCGAGGGAAAAAGAAGAAAACAAATCTGAACCTGAGAAAGCCGAGGGAGAAGACG GAGAAAAAGAGGAAAAAGCCAAAGAAGACAAGGGTAAACAAAAATTGCGGCAGCTCCACA CACATCGATATGGAGAGCCAGAAGTTCCTGAGTCAGCATTCTGGAAGAAAATCATAGCCT ACCAACAGAAACTGCTAAACTATTTTGCTCGCAACTTTTACAACATGAGAATGTTAGCCT TATTTGTCGCATTTGCAATCAACTTCATCTTGCTTTTTTATAAGGTCTCCACTTCTTCTG TGGTTGAAGGAAAGGAGCTCCCCACACGCAGTTCAAGTGAAAATGCCAACTTTGGCAGCC TGGACAGCAGCTCGCCTAGAATCATTGCCGTCCACTATGTGCTAGAGGAGAGCAGTGGCT ACATGGAGCCCACACTGCGCATCTTGGCCATTCTGCACACGGTCATCTCCTTCTTCTGCA TCATTGGCTACTACTGCCTGAAGGTCCCACTGGTAATCTTTAAGCGAGAAAAGGAAGTAG CTCGAAAATTGGAATTTGATGGGCTTTATATTACAGAACAGCCTTCAGAAGATGATATTA AAGGCCAGTGGGATAGACTCGTAATCAACACACAGTCATTTCCCAACAACTACTGGGACA AATTTGTTAAAAGAAAGGTTATGGATAAATATGGAGAGTTCTATGGCCGAGACAGAATCA GTGAGTTACTTGGCATGGATAAAGCTGCCCTGGACTTCAGCGATGCCCGGGAAAAGAAGA AGCCTAAGAAGGACAGCTCCCTGTCAGCCGTACTGAACTCTATTGATGTGAAGTATCAGA TGTGGAAACTCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 499-617, + strand, RNAz p=0.938455 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 499-617, + strand, RNAz p=0.938455 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 51-197, gnl|bosTau2|chr28 (5720591-5720737) | |
| 51-197, gnl|canFam2|chr4 (5403104-5402893) | |
| 51-197, gnl|danRer3|chr20 (37100999-37101196) | |
| 51-197, gnl|dasNov1|scaffold_4772 (12040-11830) | |
| 51-197, gnl|echTel1|scaffold_314623 (9422-9210) | |
| 51-197, gnl|galGal2|chr3 (33598853-33598683) | |
| 51-197, gnl|hg17|chr1 (234277319-234277530) | |
| 51-197, gnl|Hg17|chr1 (234277330-234277476) | |
| 51-197, gnl|loxAfr1|scaffold_11268 (40525-40734) | |
| 51-197, gnl|mm7|chr13 (11519812-11519622) | |
| 51-197, gnl|Mm7|chr13 (11519799-11519653) | |
| 51-197, gnl|monDom2|scaffold_13 (47537469-47537286) | |
| 51-197, gnl|oryCun1|scaffold_202263 (14588-14799) | |
| 51-197, gnl|panTro1|chr1 (218161872-218162083) | |
| 51-197, gnl|rheMac2|chr1 (219253824-219253613) | |
| 51-197, gnl|rn3|chr17 (69524968-69525160) | |
| 51-197, gnl|tetNig1|chrUn_random (36533195-36533013) | |
| 499-686, gnl|bosTau2|chr28 (5726930-5727115) | |
| 499-686, gnl|canFam2|chr4 (5397421-5397243) | |
| 499-686, gnl|danRer3|chr20 (37101701-37101859) | |
| 499-686, gnl|dasNov1|scaffold_4772 (6041-5864) | |
| 499-686, gnl|echTel1|scaffold_314623 (5013-4836) | |
| 499-686, gnl|fr1|chrUn (81748576-81748724) | |
| 499-686, gnl|galGal2|chr3 (33594224-33594058) | |
| 499-686, gnl|hg17|chr1 (234283177-234283354) | |
| 499-686, gnl|Hg17|chr1 (234283203-234283386) | |
| 499-686, gnl|loxAfr1|scaffold_118216 (1486-1337) | |
| 499-686, gnl|mm7|chr13 (11514001-11513822) | |
| 499-686, gnl|Mm7|chr13 (11513971-11513787) | |
| 499-686, gnl|monDom2|scaffold_13 (47531296-47531118) | |
| 499-686, gnl|oryCun1|scaffold_202263 (20539-20716) | |
| 499-686, gnl|panTro1|chr1 (218167752-218167929) | |
| 499-686, gnl|rheMac2|chr1 (219248227-219248050) | |
| 499-686, gnl|rn3|chr17 (69530894-69531070) | |
| 499-686, gnl|tetNig1|chr10 (4171808-4171982) | |
| 499-686, gnl|xenTro1|scaffold_572 (661211-661359) | |
| 502-641, gnl|bosTau2|chr10 (17700109-17699970) | |
| 502-641, gnl|canFam2|chr30 (4185418-4185233) | |
| 502-641, gnl|danRer3|chr20 (37101695-37101857) | |
| 502-641, gnl|dasNov1|scaffold_168843 (4389-4549) | |
| 502-641, gnl|echTel1|scaffold_239610 (709-531) | |
| 502-641, gnl|fr1|chrUn (81748582-81748734) | |
| 502-641, gnl|galGal2|chr5 (27066994-27066852) | |
| 502-641, gnl|hg17|chr15 (31927764-31927949) | |
| 502-641, gnl|Hg17|chr15 (31927782-31927921) | |
| 502-641, gnl|loxAfr1|scaffold_118216 (1493-1312) | |
| 502-641, gnl|mm7|chr2 (112495570-112495385) | |
| 502-641, gnl|Mm7|chr2 (112495550-112495406) | |
| 502-641, gnl|monDom2|scaffold_12 (11667015-11667178) | |
| 502-641, gnl|oryCun1|scaffold_142326 (4257-4082) | |
| 502-641, gnl|panTro1|chr16 (31564300-31564485) | |
| 502-641, gnl|rheMac2|chr7 (12080242-12080427) | |
| 502-641, gnl|rn3|chr3 (98386027-98385845) | |
| 502-641, gnl|tetNig1|chr10 (4171831-4171973) | |
| 502-641, gnl|xenTro1|scaffold_572 (661207-661367) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 51-197, gnl|bosTau2|chr28 (5720591-5720737) | |
| 51-197, gnl|canFam2|chr4 (5403104-5402893) | |
| 51-197, gnl|danRer3|chr20 (37100999-37101196) | |
| 51-197, gnl|dasNov1|scaffold_4772 (12040-11830) | |
| 51-197, gnl|echTel1|scaffold_314623 (9422-9210) | |
| 51-197, gnl|galGal2|chr3 (33598853-33598683) | |
| 51-197, gnl|hg17|chr1 (234277319-234277530) | |
| 51-197, gnl|Hg17|chr1 (234277330-234277476) | |
| 51-197, gnl|loxAfr1|scaffold_11268 (40525-40734) | |
| 51-197, gnl|mm7|chr13 (11519812-11519622) | |
| 51-197, gnl|Mm7|chr13 (11519799-11519653) | |
| 51-197, gnl|monDom2|scaffold_13 (47537469-47537286) | |
| 51-197, gnl|oryCun1|scaffold_202263 (14588-14799) | |
| 51-197, gnl|panTro1|chr1 (218161872-218162083) | |
| 51-197, gnl|rheMac2|chr1 (219253824-219253613) | |
| 51-197, gnl|rn3|chr17 (69524968-69525160) | |
| 51-197, gnl|tetNig1|chrUn_random (36533195-36533013) | |
| 499-686, gnl|bosTau2|chr28 (5726930-5727115) | |
| 499-686, gnl|canFam2|chr4 (5397421-5397243) | |
| 499-686, gnl|danRer3|chr20 (37101701-37101859) | |
| 499-686, gnl|dasNov1|scaffold_4772 (6041-5864) | |
| 499-686, gnl|echTel1|scaffold_314623 (5013-4836) | |
| 499-686, gnl|fr1|chrUn (81748576-81748724) | |
| 499-686, gnl|galGal2|chr3 (33594224-33594058) | |
| 499-686, gnl|hg17|chr1 (234283177-234283354) | |
| 499-686, gnl|Hg17|chr1 (234283203-234283386) | |
| 499-686, gnl|loxAfr1|scaffold_118216 (1486-1337) | |
| 499-686, gnl|mm7|chr13 (11514001-11513822) | |
| 499-686, gnl|Mm7|chr13 (11513971-11513787) | |
| 499-686, gnl|monDom2|scaffold_13 (47531296-47531118) | |
| 499-686, gnl|oryCun1|scaffold_202263 (20539-20716) | |
| 499-686, gnl|panTro1|chr1 (218167752-218167929) | |
| 499-686, gnl|rheMac2|chr1 (219248227-219248050) | |
| 499-686, gnl|rn3|chr17 (69530894-69531070) | |
| 499-686, gnl|tetNig1|chr10 (4171808-4171982) | |
| 499-686, gnl|xenTro1|scaffold_572 (661211-661359) | |
| 502-641, gnl|bosTau2|chr10 (17700109-17699970) | |
| 502-641, gnl|canFam2|chr30 (4185418-4185233) | |
| 502-641, gnl|danRer3|chr20 (37101695-37101857) | |
| 502-641, gnl|dasNov1|scaffold_168843 (4389-4549) | |
| 502-641, gnl|echTel1|scaffold_239610 (709-531) | |
| 502-641, gnl|fr1|chrUn (81748582-81748734) | |
| 502-641, gnl|galGal2|chr5 (27066994-27066852) | |
| 502-641, gnl|hg17|chr15 (31927764-31927949) | |
| 502-641, gnl|Hg17|chr15 (31927782-31927921) | |
| 502-641, gnl|loxAfr1|scaffold_118216 (1493-1312) | |
| 502-641, gnl|mm7|chr2 (112495570-112495385) | |
| 502-641, gnl|Mm7|chr2 (112495550-112495406) | |
| 502-641, gnl|monDom2|scaffold_12 (11667015-11667178) | |
| 502-641, gnl|oryCun1|scaffold_142326 (4257-4082) | |
| 502-641, gnl|panTro1|chr16 (31564300-31564485) | |
| 502-641, gnl|rheMac2|chr7 (12080242-12080427) | |
| 502-641, gnl|rn3|chr3 (98386027-98385845) | |
| 502-641, gnl|tetNig1|chr10 (4171831-4171973) | |
| 502-641, gnl|xenTro1|scaffold_572 (661207-661367) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| eru (0.120048) |