Ss1.1-rece40_b10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAATCAAGATGGCGGCTCCCGTGGATCTGGAGTTGAAGAAGGCCTTCACAGAGCTTCA AGCTAAAGTTATTGACACTCAACAGAAGGTGAAGCTTGCAGACATACAGATTGAACAGCT CAACAGGACAAAAAAGCATGCACATCTTACAGATACGGAGATTATGACTTTGGTAGATGA GACCAACATGTATGAAGGTGTAGGAAGAATGTTTATTCTTCAATCCAAGGAGGCGATTCA TAATCAGCTGTTAGAGAAACAGAAAATAGCAGAAGAAAAAATTAAAGAATTGGAACAGAA AAAATCCTACCTGGAGCGGAGTGTGAAGGAAGCTGAGGACAATATCCGGGAGATGCTGAT GGCACGGAGGGCACAGTAGGCAGCCTCTAGGGGAGGTGCTTCCTCCTGACCCCTGCCATT CCTGGCGAGGGCAGAGGGGCTTGTACAGGGAAACTGCGTCTGCGCTGCCTGATGGACATT TTATTATCTGGATGGTCTGGTAACCCTAGGTTTTCTGCACCATTTGGAGCCCCTTTCAGA TCCCATCACTGTATTTTTCTCCTGGCTCTGTCTGCCACCCCTCTTCCCTGGGGGCGAGTC AGGAACTCCCAGGAGTGGGAAGATGGGAGCCGGGACAGATAGGGGAGCCCTGCCTGGGCC TGCAGCCAGTCACCTGGTCAGACCAATAAAGGACATCTGTCGCACTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAATCAAGATGGCGGCTCCCGTGGATCTGGAGTTGAAGAAGGCCTTCACAGAGCTTCA AGCTAAAGTTATTGACACTCAACAGAAGGTGAAGCTTGCAGACATACAGATTGAACAGCT CAACAGGACAAAAAAGCATGCACATCTTACAGATACGGAGATTATGACTTTGGTAGATGA GACCAACATGTATGAAGGTGTAGGAAGAATGTTTATTCTTCAATCCAAGGAGGCGATTCA TAATCAGCTGTTAGAGAAACAGAAAATAGCAGAAGAAAAAATTAAAGAATTGGAACAGAA AAAATCCTACCTGGAGCGGAGTGTGAAGGAAGCTGAGGACAATATCCGGGAGATGCTGAT GGCACGGAGGGCACAGTAGGCAGCCTCTAGGGGAGGTGCTTCCTCCTGACCCCTGCCATT CCTGGCGAGGGCAGAGGGGCTTGTACAGGGAAACTGCGTCTGCGCTGCCTGATGGACATT TTATTATCTGGATGGTCTGGTAACCCTAGGTTTTCTGCACCATTTGGAGCCCCTTTCAGA TCCCATCACTGTATTTTTCTCCTGGCTCTGTCTGCCACCCCTCTTCCCTGGGGGCGAGTC AGGAACTCCCAGGAGTGGGAAGATGGGAGCCGGGACAGATAGGGGAGCCCTGCCTGGGCC TGCAGCCAGTCACCTGGTCAGACCAATAAAGGACATCTGTCGCACTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 368-487, - strand, RNAz p=0.917155 | |
| 561-672, + strand, RNAz p=0.951036 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 368-487, - strand, RNAz p=0.917155 | |
| 561-672, + strand, RNAz p=0.951036 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_002622, + |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 42-212, gnl|bosTau2|chr7 (29332936-29333106) | |
| 42-212, gnl|canFam2|chr2 (38366879-38367011) | |
| 42-212, gnl|canFam2|chr7 (80855133-80855025) | |
| 42-212, gnl|danRer3|chr22 (34990070-34989938) | |
| 42-212, gnl|dasNov1|scaffold_2805 (131129-130996) | |
| 42-212, gnl|dasNov1|scaffold_53925 (6040-5935) | |
| 42-212, gnl|echTel1|scaffold_284063 (3885-3781) | |
| 42-212, gnl|echTel1|scaffold_98662 (950-1082) | |
| 42-212, gnl|fr1|chrUn (230394509-230394328) | |
| 42-212, gnl|fr1|chrUn (230394402-230394529) | |
| 42-212, gnl|galGal2|chr13 (794657-794787) | |
| 42-212, gnl|hg17|chr3 (12344503-12344611) | |
| 42-212, gnl|hg17|chr5 (139660175-139660307) | |
| 42-212, gnl|Hg17|chr5 (139660353-139660183) | |
| 42-212, gnl|loxAfr1|scaffold_2366 (67809-67701) | |
| 42-212, gnl|loxAfr1|scaffold_2366 (67692-67824) | |
| 42-212, gnl|mm7|chr1 (194374293-194374187) | |
| 42-212, gnl|mm7|chr18 (36827308-36827440) | |
| 42-212, gnl|Mm7|chr18 (36827486-36827316) | |
| 42-212, gnl|monDom2|scaffold_6 (68502201-68502069) | |
| 42-212, gnl|oryCun1|scaffold_149697 (11045-10944) | |
| 42-212, gnl|oryCun1|scaffold_206697 (37504-37636) | |
| 42-212, gnl|panTro1|chr2 (12796521-12796629) | |
| 42-212, gnl|panTro1|chr4 (146277334-146277466) | |
| 42-212, gnl|rheMac2|chr5 (10544145-10544270) | |
| 42-212, gnl|rheMac2|chr6 (136719272-136719404) | |
| 42-212, gnl|rn3|chr18 (29119389-29119521) | |
| 42-212, gnl|rn3|chr7 (1911379-1911467) | |
| 42-212, gnl|tetNig1|chr7 (10083768-10083591) | |
| 42-212, gnl|tetNig1|chr7 (10083661-10083788) | |
| 42-212, gnl|xenTro1|scaffold_307 (1066181-1066310) | |
| 289-708, gnl|bosTau2|chr7 (29417429-29417832) | |
| 289-708, gnl|Hg17|chr5 (139605833-139605402) | |
| 289-708, gnl|Mm7|chr18 (36780705-36780322) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-212, gnl|bosTau2|chr7 (29332936-29333106) | |
| 42-212, gnl|canFam2|chr2 (38366879-38367011) | |
| 42-212, gnl|canFam2|chr7 (80855133-80855025) | |
| 42-212, gnl|danRer3|chr22 (34990070-34989938) | |
| 42-212, gnl|dasNov1|scaffold_2805 (131129-130996) | |
| 42-212, gnl|dasNov1|scaffold_53925 (6040-5935) | |
| 42-212, gnl|echTel1|scaffold_284063 (3885-3781) | |
| 42-212, gnl|echTel1|scaffold_98662 (950-1082) | |
| 42-212, gnl|fr1|chrUn (230394509-230394328) | |
| 42-212, gnl|fr1|chrUn (230394402-230394529) | |
| 42-212, gnl|galGal2|chr13 (794657-794787) | |
| 42-212, gnl|hg17|chr3 (12344503-12344611) | |
| 42-212, gnl|hg17|chr5 (139660175-139660307) | |
| 42-212, gnl|Hg17|chr5 (139660353-139660183) | |
| 42-212, gnl|loxAfr1|scaffold_2366 (67809-67701) | |
| 42-212, gnl|loxAfr1|scaffold_2366 (67692-67824) | |
| 42-212, gnl|mm7|chr1 (194374293-194374187) | |
| 42-212, gnl|mm7|chr18 (36827308-36827440) | |
| 42-212, gnl|Mm7|chr18 (36827486-36827316) | |
| 42-212, gnl|monDom2|scaffold_6 (68502201-68502069) | |
| 42-212, gnl|oryCun1|scaffold_149697 (11045-10944) | |
| 42-212, gnl|oryCun1|scaffold_206697 (37504-37636) | |
| 42-212, gnl|panTro1|chr2 (12796521-12796629) | |
| 42-212, gnl|panTro1|chr4 (146277334-146277466) | |
| 42-212, gnl|rheMac2|chr5 (10544145-10544270) | |
| 42-212, gnl|rheMac2|chr6 (136719272-136719404) | |
| 42-212, gnl|rn3|chr18 (29119389-29119521) | |
| 42-212, gnl|rn3|chr7 (1911379-1911467) | |
| 42-212, gnl|tetNig1|chr7 (10083768-10083591) | |
| 42-212, gnl|tetNig1|chr7 (10083661-10083788) | |
| 42-212, gnl|xenTro1|scaffold_307 (1066181-1066310) | |
| 289-708, gnl|bosTau2|chr7 (29417429-29417832) | |
| 289-708, gnl|Hg17|chr5 (139605833-139605402) | |
| 289-708, gnl|Mm7|chr18 (36780705-36780322) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| ece (0.45861) | |
| hlv (0.417769) | |
| nlu (0.383362) | |
| clu (0.358938) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| nca (0.273748) | |
| fce (0.271592) | |
| ese (0.253004) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nep (0.183925) | |
| duo (0.172801) | |
| cut (0.169924) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| che (0.136314) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| hlv (0.417769) | |
| nlu (0.383362) | |
| clu (0.358938) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| nca (0.273748) | |
| fce (0.271592) | |
| ese (0.253004) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nep (0.183925) | |
| duo (0.172801) | |
| cut (0.169924) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| che (0.136314) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| nbm (0.0993246) |