Non-Coding RNA Search

Ss1.1-rece40_i20.5

Sequence:


               
               CTCGAAGCAGCTGGGGAGGAGCTAAAACCTTGGTGCTCGCTCACCTAAGCCGCAGGGAGA
TACACCCAACCGGGAGATGAGGAAACTGCAACACAGAGAGAAGTAACACACACAGAATCA
TTCCTCAGAGGAGCAAGAACAAGAACCCAGACCTGGACCCTCCTAGGCAGGGAAGACTTT
CTGCAGCTTGAAGAAGCCAATATGGATTTCAAGGGCGTGAAGGACTATTTCTCCTGGCTC
TACTATCAATACCAAATCATTAGCTGCTGTGCTGTCTTAGAGCCCTGGGAGCAATCCATG
TTCAATACCATCTTACTAACCATTTTTGCTATGGTCGTGTATACCGCTTATGTTTTTATC
CCAATCCACATTCGCCTGGCCTGGGAATTTTTCTCCAAAATATGTGGCTATCAAGGTATA
GTTTCTAATTGATCTTGTTTGTATTCTATGAATGGGCATCACATATGTATATGTTGCTTA
CACTGTATTGATTTAGGTGGATACAGTGGGTTCTTTCACTATCTGACCTGAAAAGCTCTC
TCCTCTATGCATTTGTATATCCTGCCTGAAATTTGACATAGATTTCTCTTTACCTGCTAC
ATTGTGCGTCAGACCATAGATAACACAGTGACCTTACCTCACCTATCAGATTCTCTCAAC
TTAAATCTGGGACTTTAGAATTTGTTTTTAATCAGGAACTTTCATATAAACTCTTTCTGG
AAAGTAGGCTCATAAGAAACCTATCAGATTCATACTGAAAATGCTCCCTGGATACCTACT
CTATAGTGAAGGATATATTTTTAAAAAATTTGTTCACAGACTACTGTCAAAGGTATCCTA
TCCTTGTTTACAATATACAAAAATATCTGAATAAATTACATAGATTCCCCCCAAGTCTTT
TTTTCTAGTAACCTGTTGATACCTAAAATTCTTTTACTTCAAGTGTAAAACAGTGGGTTG
AAGGCAATTATCTCCTTTCATACATGGTTCATGAATTGTTTCAAATGCCTCTAAAAATCT
GGCTTTATAACAGTTTAAAATCTAAAATGTTGATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGAAGCAGCTGGGGAGGAGCTAAAACCTTGGTGCTCGCTCACCTAAGCCGCAGGGAGA
TACACCCAACCGGGAGATGAGGAAACTGCAACACAGAGAGAAGTAACACACACAGAATCA
TTCCTCAGAGGAGCAAGAACAAGAACCCAGACCTGGACCCTCCTAGGCAGGGAAGACTTT
CTGCAGCTTGAAGAAGCCAATATGGATTTCAAGGGCGTGAAGGACTATTTCTCCTGGCTC
TACTATCAATACCAAATCATTAGCTGCTGTGCTGTCTTAGAGCCCTGGGAGCAATCCATG
TTCAATACCATCTTACTAACCATTTTTGCTATGGTCGTGTATACCGCTTATGTTTTTATC
CCAATCCACATTCGCCTGGCCTGGGAATTTTTCTCCAAAATATGTGGCTATCAAGGTATA
GTTTCTAATTGATCTTGTTTGTATTCTATGAATGGGCATCACATATGTATATGTTGCTTA
CACTGTATTGATTTAGGTGGATACAGTGGGTTCTTTCACTATCTGACCTGAAAAGCTCTC
TCCTCTATGCATTTGTATATCCTGCCTGAAATTTGACATAGATTTCTCTTTACCTGCTAC
ATTGTGCGTCAGACCATAGATAACACAGTGACCTTACCTCACCTATCAGATTCTCTCAAC
TTAAATCTGGGACTTTAGAATTTGTTTTTAATCAGGAACTTTCATATAAACTCTTTCTGG
AAAGTAGGCTCATAAGAAACCTATCAGATTCATACTGAAAATGCTCCCTGGATACCTACT
CTATAGTGAAGGATATATTTTTAAAAAATTTGTTCACAGACTACTGTCAAAGGTATCCTA
TCCTTGTTTACAATATACAAAAATATCTGAATAAATTACATAGATTCCCCCCAAGTCTTT
TTTTCTAGTAACCTGTTGATACCTAAAATTCTTTTACTTCAAGTGTAAAACAGTGGGTTG
AAGGCAATTATCTCCTTTCATACATGGTTCATGAATTGTTTCAAATGCCTCTAAAAATCT
GGCTTTATAACAGTTTAAAATCTAAAATGTTGATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47938349|gb|AAH71875.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47938349|gb|AAH71875.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               168-1056, gnl|bosTau2|chr1 (69314276-69313370)
               

               
               168-1056, gnl|Hg17|chr3 (162546848-162545943)
               

               
               168-1056, gnl|Mm7|chr3 (69922139-69921208)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-1056, gnl|bosTau2|chr1 (69314276-69313370)
               

               
               168-1056, gnl|Hg17|chr3 (162546848-162545943)
               

               
               168-1056, gnl|Mm7|chr3 (69922139-69921208)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               csk (0.140746)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               csk (0.140746)

	168-1056, gnl\|bosTau2\|chr1 (69314276-69313370)
	168-1056, gnl\|Hg17\|chr3 (162546848-162545943)
	168-1056, gnl\|Mm7\|chr3 (69922139-69921208)