Non-Coding RNA Search

Ss1.1-rece40_l12.5

Sequence:


               
               GAAGACAAGAAAGCTTTTTTTCCCTCAAATTCTTTTCTTTTCTACTTCTATTTTGAGGAT
ATGTTTGTCTTACATGGACCAAGTTTCAGTACTTTTTTGTTTTTAAATAAAAACTTCCTT
TGAAACATTAAATAGTAACTTTTTGCTATGTTTCAGTAAGGTCAAAAAAACAGCAAATCT
TAAATTTTTGCTGCTCAAATATTATGGAGAAGATAGAAAAGGAGAACTTCCGTGGACAAG
GACACTGGTACTTTGGGCTTTAGCCATATTCATTTTTTTAAACCACCAATTACATAATGA
ATAGATAACTTATAACACTGAACTTGTGATTGTTTTCAAATCACACTTGAAAGTTCAGCT
GTACTCCTTTCATGTTTGGTTTAAACTGTAGTATGGACGAAAAACCTAAAAGGGATAATA
GTGTTTATTTTTTAATTTATTTGGTACTGTAAAACACCTTTTCAGAATGACTAAATGCTG
CATATGCATTTTGGAATTGTTAATATGTGAAAGATATTACAGATTCAGCAAGAAAGGAAA
TTTGTGCTTCCTTGTTGAATATTAAATTATTTTACTTTGCATTTTATAAGAGTACAAATC
AAAACTGAGCCATTGAACTGCAATAAATCAACAATAGTGTCTCATTTCAAGAAATTTTTT
GTATTGTACATAGATTTGTTCAATAAAACATTGTCCTTGTTGGTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGACAAGAAAGCTTTTTTTCCCTCAAATTCTTTTCTTTTCTACTTCTATTTTGAGGAT
ATGTTTGTCTTACATGGACCAAGTTTCAGTACTTTTTTGTTTTTAAATAAAAACTTCCTT
TGAAACATTAAATAGTAACTTTTTGCTATGTTTCAGTAAGGTCAAAAAAACAGCAAATCT
TAAATTTTTGCTGCTCAAATATTATGGAGAAGATAGAAAAGGAGAACTTCCGTGGACAAG
GACACTGGTACTTTGGGCTTTAGCCATATTCATTTTTTTAAACCACCAATTACATAATGA
ATAGATAACTTATAACACTGAACTTGTGATTGTTTTCAAATCACACTTGAAAGTTCAGCT
GTACTCCTTTCATGTTTGGTTTAAACTGTAGTATGGACGAAAAACCTAAAAGGGATAATA
GTGTTTATTTTTTAATTTATTTGGTACTGTAAAACACCTTTTCAGAATGACTAAATGCTG
CATATGCATTTTGGAATTGTTAATATGTGAAAGATATTACAGATTCAGCAAGAAAGGAAA
TTTGTGCTTCCTTGTTGAATATTAAATTATTTTACTTTGCATTTTATAAGAGTACAAATC
AAAACTGAGCCATTGAACTGCAATAAATCAACAATAGTGTCTCATTTCAAGAAATTTTTT
GTATTGTACATAGATTTGTTCAATAAAACATTGTCCTTGTTGGTAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               229-384, - strand, RNAz p=0.855516
               

               
               464-583, + strand, RNAz p=0.884057

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-384, - strand, RNAz p=0.855516
               

               
               464-583, + strand, RNAz p=0.884057

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               30-706, gnl|bosTau2|chr1 (20031493-20030818)
               

               
               30-706, gnl|Hg17|chr3 (88275836-88276500)
               

               
               30-706, gnl|Mm7|chr16 (64727479-64726907)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-706, gnl|bosTau2|chr1 (20031493-20030818)
               

               
               30-706, gnl|Hg17|chr3 (88275836-88276500)
               

               
               30-706, gnl|Mm7|chr16 (64727479-64726907)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               vin (0.332557)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               duo (0.172801)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               thg (0.126791)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               duo (0.172801)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               thg (0.126791)

	229-384, - strand, RNAz p=0.855516
	464-583, + strand, RNAz p=0.884057

	30-706, gnl\|bosTau2\|chr1 (20031493-20030818)
	30-706, gnl\|Hg17\|chr3 (88275836-88276500)
	30-706, gnl\|Mm7\|chr16 (64727479-64726907)

	vin (0.332557)
	tra (0.246184)
	ece (0.229305)
	duo (0.172801)
	bfe (0.149858)
	lin (0.145603)
	thg (0.126791)