Non-Coding RNA Search

Ss1.1-rece40_n9.5

Sequence:


               
               TATGTCTTAAAAATGTTTTCTTATGCTATTTAAGTGCAGTTAAAGAGGTATCAAGGTAAC
TTGTGTAGAACTATTGTTTGATATATTGTCATGTTTGTTGTGAATATTTTTTCTTACTGC
ACAGTAGAAAAATAAAAACAACTGGGTCTTTATTTTAATGTAACTCAGATTGGGGAAAAC
AAAACAGAGCTAAAGGAACAAAATGACTGAGGGAGCTTTCTCCCACGTCCAGTGCACTGA
TCATTTGAGTATGTTTGTGCTTCGTACGGTTATATATTTAAAACAAAAACAAAACAAAAA
AATACAAGGGTTCATGCTCTTCCCTGGGTAATAGAAACAGTTACTCGCTATGCATAATCT
AGTTGATAGTTAAATTTGCTATTGCTTTTCTTGTCTTGTTATATACAATCTTTTCAATAC
CAGTTTAGTCTTAATGGTAATAAAACGTTATGGTTATTTATAACTTGTGCTTATTTTGTG
CGTTTTTTCCCATGCTGAACCCACTAAGTGCATGTAGACAGAACTGTTGTTTTCACACTG
AAGAGGCAAACTTTGTAGTAGTCGTTGTAGTGGTAGACAGATAACGAAAACCACGGCTGC
ATCATAGACTCCTCCTTTAAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGTCTTAAAAATGTTTTCTTATGCTATTTAAGTGCAGTTAAAGAGGTATCAAGGTAAC
TTGTGTAGAACTATTGTTTGATATATTGTCATGTTTGTTGTGAATATTTTTTCTTACTGC
ACAGTAGAAAAATAAAAACAACTGGGTCTTTATTTTAATGTAACTCAGATTGGGGAAAAC
AAAACAGAGCTAAAGGAACAAAATGACTGAGGGAGCTTTCTCCCACGTCCAGTGCACTGA
TCATTTGAGTATGTTTGTGCTTCGTACGGTTATATATTTAAAACAAAAACAAAACAAAAA
AATACAAGGGTTCATGCTCTTCCCTGGGTAATAGAAACAGTTACTCGCTATGCATAATCT
AGTTGATAGTTAAATTTGCTATTGCTTTTCTTGTCTTGTTATATACAATCTTTTCAATAC
CAGTTTAGTCTTAATGGTAATAAAACGTTATGGTTATTTATAACTTGTGCTTATTTTGTG
CGTTTTTTCCCATGCTGAACCCACTAAGTGCATGTAGACAGAACTGTTGTTTTCACACTG
AAGAGGCAAACTTTGTAGTAGTCGTTGTAGTGGTAGACAGATAACGAAAACCACGGCTGC
ATCATAGACTCCTCCTTTAAATTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-624, gnl|bosTau2|chr3 (65715326-65715949)
               

               
               1-624, gnl|Hg17|chr1 (50380440-50381063)
               

               
               1-624, gnl|Mm7|chr4 (109581214-109580586)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr3 (65715326-65715949)
               

               
               1-624, gnl|Hg17|chr1 (50380440-50381063)
               

               
               1-624, gnl|Mm7|chr4 (109581214-109580586)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.39557)
               

               
               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)

	1-624, gnl\|bosTau2\|chr3 (65715326-65715949)
	1-624, gnl\|Hg17\|chr1 (50380440-50381063)
	1-624, gnl\|Mm7\|chr4 (109581214-109580586)

	fcc (0.39557)
	fco (0.314416)
	cbe (0.239234)
	ece (0.229305)
	fbs (0.175346)