Non-Coding RNA Search

Ss1.1-rece40_p4.5

Sequence:


               
               ACTAGACCTGGGTAGCCTTGCTCCACCGAACTAGAGGAACGCTGCTAGGTCTGGCTTGCG
ATTCCTCCGGGCTTCTGGGTGAAGCTAGCCACCGCGCGCGGCCAGGAGCGACGATGGAGA
GACTGGTGTTCAGGAGCTTCTTCTGCCATCTCTCTACCTTCCAACTGATTTGGTTCATGG
CAGCAGGGATGCTGTGCAGGGCACAAGTGGTGACCCAAGATGTAAGAGAGCGGCTGAACA
CACCTGCTTCTTTAAGATGCTCTCTGCAAAATCCCCAGGAAGTTTTGATTGTGACATGGC
AAAAAATCAAGGCTGTGAGCCCAGAAAACATGATCACCTTCAGCAAGAACCATGGGGTTG
TAGTTCAGCCTGCTTATAAGGACAAGATAAACATCACCCAGCTGGGACTCATGAACTCAA
CCATTACCTTCTGGAATACCACCTTGGAGGATGAGGGTTGTTACAAGTGCCTCTTCAATA
CCTTTGGTGCCGGGAAGATCTCAGGAATAGCCTGCCTCACCCTCTCTGTACAGCCCACAG
TATCCCTTCACTATAAATTATCTGAAGACCAACTAAATATCACTTGCTCTGCCAATGCTC
GCCCAGCCCCTATGATCTCCTGGAAGATATCTGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTAGACCTGGGTAGCCTTGCTCCACCGAACTAGAGGAACGCTGCTAGGTCTGGCTTGCG
ATTCCTCCGGGCTTCTGGGTGAAGCTAGCCACCGCGCGCGGCCAGGAGCGACGATGGAGA
GACTGGTGTTCAGGAGCTTCTTCTGCCATCTCTCTACCTTCCAACTGATTTGGTTCATGG
CAGCAGGGATGCTGTGCAGGGCACAAGTGGTGACCCAAGATGTAAGAGAGCGGCTGAACA
CACCTGCTTCTTTAAGATGCTCTCTGCAAAATCCCCAGGAAGTTTTGATTGTGACATGGC
AAAAAATCAAGGCTGTGAGCCCAGAAAACATGATCACCTTCAGCAAGAACCATGGGGTTG
TAGTTCAGCCTGCTTATAAGGACAAGATAAACATCACCCAGCTGGGACTCATGAACTCAA
CCATTACCTTCTGGAATACCACCTTGGAGGATGAGGGTTGTTACAAGTGCCTCTTCAATA
CCTTTGGTGCCGGGAAGATCTCAGGAATAGCCTGCCTCACCCTCTCTGTACAGCCCACAG
TATCCCTTCACTATAAATTATCTGAAGACCAACTAAATATCACTTGCTCTGCCAATGCTC
GCCCAGCCCCTATGATCTCCTGGAAGATATCTGGGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|7340143|gb|AAF61105.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|7340143|gb|AAF61105.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               326-445, - strand, RNAz p=0.566616

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               326-445, - strand, RNAz p=0.566616

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               207-636, gnl|bosTau2|chr3 (33095239-33095663)
               

               
               207-636, gnl|Hg17|chr3 (113546504-113549202)
               

               
               207-636, gnl|Mm7|chr16 (45174816-45172284)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               207-636, gnl|bosTau2|chr3 (33095239-33095663)
               

               
               207-636, gnl|Hg17|chr3 (113546504-113549202)
               

               
               207-636, gnl|Mm7|chr16 (45174816-45172284)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	207-636, gnl\|bosTau2\|chr3 (33095239-33095663)
	207-636, gnl\|Hg17\|chr3 (113546504-113549202)
	207-636, gnl\|Mm7\|chr16 (45174816-45172284)