Non-Coding RNA Search

Ss1.1-reep01c_c10.5

Sequence:


               
               ACGTGACAGAGGCCGAGCCCTCGGTCCAGCACCCGGTCACCAAGAGCGCCACGCGGCGCA
TCGTCCACGCGGGCACACAGCCCAGCGCCGGCGACCCCAGCGCAGGGCACCACTCCCTGG
GCCTGTGTCCGGAGCTGGCGCCCTACGCGGCGCTCGTGGCCTCCCTCGCGGACAGCAGGC
CCAGCAGCGCCCGCCAGCGGCCCATCGCCTTCGACAACGCCACCCACTATTACCTCTACA
ACCGCCTGCTGGACTTCCTCACCAGCCGCGAGATCGTCAACCGGCAGATCCACGACGTGG
TGCAGGGCTGCCAGCCGGGCGAGGTGGTCATCCGCGACACCCTCTACCGCCTGGGGGTGG
CGCAGATCAAGACCGAGACGGACGCGGACGTGGACGCGGAGGACGCGGACGTGGCCGCAG
AATAAGCCAGGTTTTTATGTACAGGGCCTGCATCATCTCTCTCAAGCCATAATATGGCCC
TTGCCCAAGGCAGTCCTTTGAGAGGACCTGCAGTCCTCTGTAGGGAGGGCCTCTGACTGC
TGGAACTGACCAAAGAGCTTCCATTTCATGAGCACAGTGGGGCCCTCAACCTCTAAGGCT
CAGGAGAGGTGCTGGGAAACCTCTACTTGACCTGAGAGAGCACGTGGGTTGGGGAGCATG
ATATTTTTAAGGATCAGATGCTGATGGCAAGGCCGGGGCCTGGTTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGTGACAGAGGCCGAGCCCTCGGTCCAGCACCCGGTCACCAAGAGCGCCACGCGGCGCA
TCGTCCACGCGGGCACACAGCCCAGCGCCGGCGACCCCAGCGCAGGGCACCACTCCCTGG
GCCTGTGTCCGGAGCTGGCGCCCTACGCGGCGCTCGTGGCCTCCCTCGCGGACAGCAGGC
CCAGCAGCGCCCGCCAGCGGCCCATCGCCTTCGACAACGCCACCCACTATTACCTCTACA
ACCGCCTGCTGGACTTCCTCACCAGCCGCGAGATCGTCAACCGGCAGATCCACGACGTGG
TGCAGGGCTGCCAGCCGGGCGAGGTGGTCATCCGCGACACCCTCTACCGCCTGGGGGTGG
CGCAGATCAAGACCGAGACGGACGCGGACGTGGACGCGGAGGACGCGGACGTGGCCGCAG
AATAAGCCAGGTTTTTATGTACAGGGCCTGCATCATCTCTCTCAAGCCATAATATGGCCC
TTGCCCAAGGCAGTCCTTTGAGAGGACCTGCAGTCCTCTGTAGGGAGGGCCTCTGACTGC
TGGAACTGACCAAAGAGCTTCCATTTCATGAGCACAGTGGGGCCCTCAACCTCTAAGGCT
CAGGAGAGGTGCTGGGAAACCTCTACTTGACCTGAGAGAGCACGTGGGTTGGGGAGCATG
ATATTTTTAAGGATCAGATGCTGATGGCAAGGCCGGGGCCTGGTTGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               440-552, - strand, RNAz p=0.665422

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               440-552, - strand, RNAz p=0.665422

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-585, gnl|bosTau2|chr7 (41892920-41893478)
               

               
               1-585, gnl|Hg17|chr5 (149411524-149412111)
               

               
               1-585, gnl|Mm7|chr18 (61521991-61521419)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-585, gnl|bosTau2|chr7 (41892920-41893478)
               

               
               1-585, gnl|Hg17|chr5 (149411524-149412111)
               

               
               1-585, gnl|Mm7|chr18 (61521991-61521419)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               jca (0.11396)

	1-585, gnl\|bosTau2\|chr7 (41892920-41893478)
	1-585, gnl\|Hg17\|chr5 (149411524-149412111)
	1-585, gnl\|Mm7\|chr18 (61521991-61521419)