Ss1.1-reep01c_c21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTGCTGCTCACGGCCATCATGCGTGCCATGTGGTTCGCCGGCGGCTTCCACCGAGTGG CCGTGAAGGGGCGGCAGGCCCCGCCCGCTGAGGCCACCATCCTCACGCTGGCGCCGCACT CCTCCTACTTCGACGCCATCCCTGTCACCATGACCATGTCCTCCATCGTGATGAAGGCGG AGAGCAGAGACATCCCGATATGGGGAACGCTGATAAAGTACATCCGGCCAGTGTTCGTGT CCCGGTCCGACCAGGATTCCCGAAGGAAGACGGTGGAGGAGATCAAGAGACGGGCGCAGG CTGGCGGGAGGTGGCCTCAGATAATGATTTTTCCAGAAGGCACGTGTACCAACAGGACCT GCCTCATCACCTTCAAGCCTGGACACCATCACGTGGACCTGGCAAGGACCCGGAGCGTTG AAGATCCTGTGGCTCACGCTGTGTCAGTTTCACAATCAAGTGGAAATTGAGTTCCTGCCT GTGTACCACCCGTCGGAGGAGGAGAAGAAGGACCCCGCCCTGTACGCCAGCAACGTGCGG CGGGTGATGGCACAGGCCCTGGGCATCTCCGTGACCGACTACACTTTTGAGGACTGCCAG CTGGCCCTGGCGGAAGGCCAGCTCCGTCTCCCCGCGGACACCTGCCTGCTGGAGTTTGCG CGGCTGGTGAGGGGCCTGGGTCTAAAACCAGAAAAGCTCGAGCAAGGTCTGGACAGACAC GCAGAAAGCGCTCGGAGGAAGCCCCGCGGAAGGGTGTCCCTCCCGGAGTTTGCGGCACAG CTGGAGGTCCCCCAGTCGGAGGCGCTGCAGGACCTGTTCTCCCTGTTTGATGAGGTAGGG TCACCACCGATCCGGGGCTGGGGAGGGCATCGCCGTCCCTCTCTGAGCAGTATGTTCTTC AGAAGATTCTGGAAGCAGAGCAGGGAAACCATTGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTGCTGCTCACGGCCATCATGCGTGCCATGTGGTTCGCCGGCGGCTTCCACCGAGTGG CCGTGAAGGGGCGGCAGGCCCCGCCCGCTGAGGCCACCATCCTCACGCTGGCGCCGCACT CCTCCTACTTCGACGCCATCCCTGTCACCATGACCATGTCCTCCATCGTGATGAAGGCGG AGAGCAGAGACATCCCGATATGGGGAACGCTGATAAAGTACATCCGGCCAGTGTTCGTGT CCCGGTCCGACCAGGATTCCCGAAGGAAGACGGTGGAGGAGATCAAGAGACGGGCGCAGG CTGGCGGGAGGTGGCCTCAGATAATGATTTTTCCAGAAGGCACGTGTACCAACAGGACCT GCCTCATCACCTTCAAGCCTGGACACCATCACGTGGACCTGGCAAGGACCCGGAGCGTTG AAGATCCTGTGGCTCACGCTGTGTCAGTTTCACAATCAAGTGGAAATTGAGTTCCTGCCT GTGTACCACCCGTCGGAGGAGGAGAAGAAGGACCCCGCCCTGTACGCCAGCAACGTGCGG CGGGTGATGGCACAGGCCCTGGGCATCTCCGTGACCGACTACACTTTTGAGGACTGCCAG CTGGCCCTGGCGGAAGGCCAGCTCCGTCTCCCCGCGGACACCTGCCTGCTGGAGTTTGCG CGGCTGGTGAGGGGCCTGGGTCTAAAACCAGAAAAGCTCGAGCAAGGTCTGGACAGACAC GCAGAAAGCGCTCGGAGGAAGCCCCGCGGAAGGGTGTCCCTCCCGGAGTTTGCGGCACAG CTGGAGGTCCCCCAGTCGGAGGCGCTGCAGGACCTGTTCTCCCTGTTTGATGAGGTAGGG TCACCACCGATCCGGGGCTGGGGAGGGCATCGCCGTCCCTCTCTGAGCAGTATGTTCTTC AGAAGATTCTGGAAGCAGAGCAGGGAAACCATTGTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 1-207, gnl|bosTau2|chr20 (42538208-42538414) | |
| 1-207, gnl|canFam2|chr34 (14178191-14177939) | |
| 1-207, gnl|danRer3|chr11 (36230815-36231039) | |
| 1-207, gnl|echTel1|scaffold_221573 (2205-2450) | |
| 1-207, gnl|fr1|chrUn (152070860-152071104) | |
| 1-207, gnl|galGal2|chr2 (85794350-85794580) | |
| 1-207, gnl|hg17|chr5 (1547796-1548049) | |
| 1-207, gnl|Hg17|chr5 (1548021-1547815) | |
| 1-207, gnl|loxAfr1|scaffold_15210 (30859-30619) | |
| 1-207, gnl|mm7|chr13 (70420607-70420368) | |
| 1-207, gnl|Mm7|chr13 (70420386-70420592) | |
| 1-207, gnl|monDom2|scaffold_4 (16040259-16040502) | |
| 1-207, gnl|panTro1|chr4 (1601870-1602116) | |
| 1-207, gnl|rheMac2|chr6 (1169461-1169714) | |
| 1-207, gnl|rn3|chr1 (30602421-30602664) | |
| 1-207, gnl|tetNig1|chr8 (4590850-4590595) | |
| 1-207, gnl|xenTro1|scaffold_121 (1846562-1846792) | |
| 210-320, gnl|bosTau2|chr20 (42540760-42540870) | |
| 210-320, gnl|canFam2|chr34 (14182819-14182661) | |
| 210-320, gnl|danRer3|chr11 (36228422-36228587) | |
| 210-320, gnl|echTel1|scaffold_320011 (52429-52323) | |
| 210-320, gnl|fr1|chrUn (152069929-152070065) | |
| 210-320, gnl|galGal2|chr2 (85788119-85788268) | |
| 210-320, gnl|hg17|chr5 (1542832-1543014) | |
| 210-320, gnl|Hg17|chr5 (1542971-1542861) | |
| 210-320, gnl|loxAfr1|scaffold_3156 (4812-4712) | |
| 210-320, gnl|mm7|chr13 (70426419-70426258) | |
| 210-320, gnl|Mm7|chr13 (70426295-70426405) | |
| 210-320, gnl|oryCun1|scaffold_136440 (890-723) | |
| 210-320, gnl|panTro1|chr4 (1596184-1596366) | |
| 210-320, gnl|rheMac2|chr6 (1164150-1164332) | |
| 210-320, gnl|rn3|chr1 (30596178-30596332) | |
| 210-320, gnl|tetNig1|chr8 (4591742-4591591) | |
| 210-320, gnl|xenTro1|scaffold_121 (1837078-1837240) | |
| 555-680, gnl|bosTau2|chr20 (42548990-42549115) | |
| 555-680, gnl|canFam2|chr34 (14193273-14193011) | |
| 555-680, gnl|danRer3|chr19 (33009457-33009282) | |
| 555-680, gnl|echTel1|scaffold_263323 (3240-3376) | |
| 555-680, gnl|fr1|chrUn (152067361-152067527) | |
| 555-680, gnl|hg17|chr5 (1527641-1527819) | |
| 555-680, gnl|Hg17|chr5 (1527800-1527675) | |
| 555-680, gnl|loxAfr1|scaffold_95809 (804-625) | |
| 555-680, gnl|mm7|chr13 (70441644-70441482) | |
| 555-680, gnl|Mm7|chr13 (70441487-70441612) | |
| 555-680, gnl|monDom2|scaffold_4 (15977819-15977986) | |
| 555-680, gnl|panTro1|chr4_random (15240226-15240051) | |
| 555-680, gnl|rheMac2|chr6 (1149293-1149471) | |
| 555-680, gnl|rn3|chr1 (30582334-30582501) | |
| 555-680, gnl|tetNig1|chr8 (4595303-4595146) | |
| 682-838, gnl|bosTau2|chr20 (42549659-42549815) | |
| 682-838, gnl|Hg17|chr5 (1527224-1527059) | |
| 682-838, gnl|Mm7|chr13 (70442340-70442494) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-207, gnl|bosTau2|chr20 (42538208-42538414) | |
| 1-207, gnl|canFam2|chr34 (14178191-14177939) | |
| 1-207, gnl|danRer3|chr11 (36230815-36231039) | |
| 1-207, gnl|echTel1|scaffold_221573 (2205-2450) | |
| 1-207, gnl|fr1|chrUn (152070860-152071104) | |
| 1-207, gnl|galGal2|chr2 (85794350-85794580) | |
| 1-207, gnl|hg17|chr5 (1547796-1548049) | |
| 1-207, gnl|Hg17|chr5 (1548021-1547815) | |
| 1-207, gnl|loxAfr1|scaffold_15210 (30859-30619) | |
| 1-207, gnl|mm7|chr13 (70420607-70420368) | |
| 1-207, gnl|Mm7|chr13 (70420386-70420592) | |
| 1-207, gnl|monDom2|scaffold_4 (16040259-16040502) | |
| 1-207, gnl|panTro1|chr4 (1601870-1602116) | |
| 1-207, gnl|rheMac2|chr6 (1169461-1169714) | |
| 1-207, gnl|rn3|chr1 (30602421-30602664) | |
| 1-207, gnl|tetNig1|chr8 (4590850-4590595) | |
| 1-207, gnl|xenTro1|scaffold_121 (1846562-1846792) | |
| 210-320, gnl|bosTau2|chr20 (42540760-42540870) | |
| 210-320, gnl|canFam2|chr34 (14182819-14182661) | |
| 210-320, gnl|danRer3|chr11 (36228422-36228587) | |
| 210-320, gnl|echTel1|scaffold_320011 (52429-52323) | |
| 210-320, gnl|fr1|chrUn (152069929-152070065) | |
| 210-320, gnl|galGal2|chr2 (85788119-85788268) | |
| 210-320, gnl|hg17|chr5 (1542832-1543014) | |
| 210-320, gnl|Hg17|chr5 (1542971-1542861) | |
| 210-320, gnl|loxAfr1|scaffold_3156 (4812-4712) | |
| 210-320, gnl|mm7|chr13 (70426419-70426258) | |
| 210-320, gnl|Mm7|chr13 (70426295-70426405) | |
| 210-320, gnl|oryCun1|scaffold_136440 (890-723) | |
| 210-320, gnl|panTro1|chr4 (1596184-1596366) | |
| 210-320, gnl|rheMac2|chr6 (1164150-1164332) | |
| 210-320, gnl|rn3|chr1 (30596178-30596332) | |
| 210-320, gnl|tetNig1|chr8 (4591742-4591591) | |
| 210-320, gnl|xenTro1|scaffold_121 (1837078-1837240) | |
| 555-680, gnl|bosTau2|chr20 (42548990-42549115) | |
| 555-680, gnl|canFam2|chr34 (14193273-14193011) | |
| 555-680, gnl|danRer3|chr19 (33009457-33009282) | |
| 555-680, gnl|echTel1|scaffold_263323 (3240-3376) | |
| 555-680, gnl|fr1|chrUn (152067361-152067527) | |
| 555-680, gnl|hg17|chr5 (1527641-1527819) | |
| 555-680, gnl|Hg17|chr5 (1527800-1527675) | |
| 555-680, gnl|loxAfr1|scaffold_95809 (804-625) | |
| 555-680, gnl|mm7|chr13 (70441644-70441482) | |
| 555-680, gnl|Mm7|chr13 (70441487-70441612) | |
| 555-680, gnl|monDom2|scaffold_4 (15977819-15977986) | |
| 555-680, gnl|panTro1|chr4_random (15240226-15240051) | |
| 555-680, gnl|rheMac2|chr6 (1149293-1149471) | |
| 555-680, gnl|rn3|chr1 (30582334-30582501) | |
| 555-680, gnl|tetNig1|chr8 (4595303-4595146) | |
| 682-838, gnl|bosTau2|chr20 (42549659-42549815) | |
| 682-838, gnl|Hg17|chr5 (1527224-1527059) | |
| 682-838, gnl|Mm7|chr13 (70442340-70442494) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |