Ss1.1-reep01c_d15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAGCGCGCCCGGCCCCATGGACAGCTCGGCCGTCATTACTCAGATCACCAGAGGAGGA AGCGCGGAGTCCGCTACGGGGCAAAGGTGACCAGAAGTCTACAGCTTCCCAGAAGCCCCG GAGTCGGGGCATCCTCCACTCACTTTTCTGCTGCGTCTGCCGGGACGATGGGGAGGCCCT GCCGGCCCACAGCGGGGCGCCTCTGCTGGTGGAGGAGAATGGTGCCGTCCCCAAGCAGAG CCCCGTCCAGTACCTGCTCCCCGAGGCCAAGGCCCAGGACTCGGACAAGATCTGCGTGGT CATCGACCTGGATGAGACGCTGGTGCACAGCTCCTTCAAGCCAGTGAACAATGCCGACTT CATCATCCCTGTGGAGATCGATGGGGTGGTCCACCAGGTCTATGTGCTGAAGCGGCCCCA CGTTGACGAGTTCCTGCAGCGGATGGGTGAGCTCTTCGAATGTGTGCTGTTCACCGCCAG CCTTGCCAAGTACGCAGACCCAGTAGCTGACCTGCTGGACAAGTGGGGGGCCTTCCGGGC GCGGCTGTTTCGAGAGTCATGCGTCTTCCACCGGGGGAACTACGTGAAGGACCTGAGCCG GCTGGGCCGAGACCTTCGGCGGGTGCTCATCCTGGACAACTCGCCCGCCTCCTATGTCTT CCATCCAGATAACGCCGTACCAGTAGCCTCGTGGTTTGACAACATGAGTGACACGGAGCT CCACGACCTCCTGCCCTTCTTCGAGCAGCTCAGCCGCGTGGATGACGTGTACTCAGTGCT CAGGCAGCCTCGGCCCGGCAGCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAGCGCGCCCGGCCCCATGGACAGCTCGGCCGTCATTACTCAGATCACCAGAGGAGGA AGCGCGGAGTCCGCTACGGGGCAAAGGTGACCAGAAGTCTACAGCTTCCCAGAAGCCCCG GAGTCGGGGCATCCTCCACTCACTTTTCTGCTGCGTCTGCCGGGACGATGGGGAGGCCCT GCCGGCCCACAGCGGGGCGCCTCTGCTGGTGGAGGAGAATGGTGCCGTCCCCAAGCAGAG CCCCGTCCAGTACCTGCTCCCCGAGGCCAAGGCCCAGGACTCGGACAAGATCTGCGTGGT CATCGACCTGGATGAGACGCTGGTGCACAGCTCCTTCAAGCCAGTGAACAATGCCGACTT CATCATCCCTGTGGAGATCGATGGGGTGGTCCACCAGGTCTATGTGCTGAAGCGGCCCCA CGTTGACGAGTTCCTGCAGCGGATGGGTGAGCTCTTCGAATGTGTGCTGTTCACCGCCAG CCTTGCCAAGTACGCAGACCCAGTAGCTGACCTGCTGGACAAGTGGGGGGCCTTCCGGGC GCGGCTGTTTCGAGAGTCATGCGTCTTCCACCGGGGGAACTACGTGAAGGACCTGAGCCG GCTGGGCCGAGACCTTCGGCGGGTGCTCATCCTGGACAACTCGCCCGCCTCCTATGTCTT CCATCCAGATAACGCCGTACCAGTAGCCTCGTGGTTTGACAACATGAGTGACACGGAGCT CCACGACCTCCTGCCCTTCTTCGAGCAGCTCAGCCGCGTGGATGACGTGTACTCAGTGCT CAGGCAGCCTCGGCCCGGCAGCTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 227-340, gnl|bosTau2|chr2 (59675430-59675316) | |
| 227-340, gnl|Hg17|chr2 (219092330-219092443) | |
| 227-340, gnl|Mm7|chr1 (74633462-74633574) | |
| 486-688, gnl|bosTau2|chr22 (9008223-9008023) | |
| 486-688, gnl|canFam2|chr23 (10763717-10763921) | |
| 486-688, gnl|danRer3|chr24 (9424653-9424453) | |
| 486-688, gnl|dasNov1|scaffold_13471 (22164-22368) | |
| 486-688, gnl|echTel1|scaffold_219391 (7771-7976) | |
| 486-688, gnl|fr1|chrUn (122620082-122619887) | |
| 486-688, gnl|galGal2|chr2 (4039129-4039328) | |
| 486-688, gnl|hg17|chr3 (37992197-37992402) | |
| 486-688, gnl|Hg17|chr3 (37992199-37992399) | |
| 486-688, gnl|loxAfr1|scaffold_11717 (5548-5752) | |
| 486-688, gnl|mm7|chr9 (118717558-118717763) | |
| 486-688, gnl|Mm7|chr9 (118717560-118717760) | |
| 486-688, gnl|monDom2|scaffold_390 (54224-54019) | |
| 486-688, gnl|oryCun1|scaffold_40932 (545-750) | |
| 486-688, gnl|panTro1|chr2 (39097616-39097821) | |
| 486-688, gnl|rheMac2|chr2 (98567895-98567690) | |
| 486-688, gnl|rn3|chr8 (124006872-124007077) | |
| 486-688, gnl|tetNig1|chr6 (3131712-3131911) | |
| 486-688, gnl|xenTro1|scaffold_318 (327657-327451) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 227-340, gnl|bosTau2|chr2 (59675430-59675316) | |
| 227-340, gnl|Hg17|chr2 (219092330-219092443) | |
| 227-340, gnl|Mm7|chr1 (74633462-74633574) | |
| 486-688, gnl|bosTau2|chr22 (9008223-9008023) | |
| 486-688, gnl|canFam2|chr23 (10763717-10763921) | |
| 486-688, gnl|danRer3|chr24 (9424653-9424453) | |
| 486-688, gnl|dasNov1|scaffold_13471 (22164-22368) | |
| 486-688, gnl|echTel1|scaffold_219391 (7771-7976) | |
| 486-688, gnl|fr1|chrUn (122620082-122619887) | |
| 486-688, gnl|galGal2|chr2 (4039129-4039328) | |
| 486-688, gnl|hg17|chr3 (37992197-37992402) | |
| 486-688, gnl|Hg17|chr3 (37992199-37992399) | |
| 486-688, gnl|loxAfr1|scaffold_11717 (5548-5752) | |
| 486-688, gnl|mm7|chr9 (118717558-118717763) | |
| 486-688, gnl|Mm7|chr9 (118717560-118717760) | |
| 486-688, gnl|monDom2|scaffold_390 (54224-54019) | |
| 486-688, gnl|oryCun1|scaffold_40932 (545-750) | |
| 486-688, gnl|panTro1|chr2 (39097616-39097821) | |
| 486-688, gnl|rheMac2|chr2 (98567895-98567690) | |
| 486-688, gnl|rn3|chr8 (124006872-124007077) | |
| 486-688, gnl|tetNig1|chr6 (3131712-3131911) | |
| 486-688, gnl|xenTro1|scaffold_318 (327657-327451) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.140036) | |
| eep (0.122564) | |
| cty (0.10408) |