Ss1.1-reep01c_g22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGCTGCCCGCCTAGAGGAGGGAGCCGGGCGAGGGCGAGGAGGGAGCCGGCGGGGCGC AGGCGAGGCGGGGACCGGGCGCGCGCACTTTTCCCGCAAAGTGCCAACTACCCGGGAGAG AGTTCCGGGCGCTCATCTCTGGGCGCGGGGGAAAGTCAGCAGTCAGCGGGAATTTGAGAT TTTAGGAAAGAAAGTCCGATCTCCCGGTCCCCTTTCCCTTGTTACCGATCCCTATTAAAA AGAAAAACAACAGGAATAACAGCAAACTTGCTCTAGTCTTGTCTGTACCCCACTCCTGGC ACCATGAAGGCGGCCGTCGATCTCAAACCGACACTCACAATCATCAAGACGGAAAAAGTG GATCTGGAGCTTTTCCCCTCCCCCGATATGGAATGTGCAGATGTCCCACTCCTAACTCCA AGCAGCAAAGAAATGATGTCTCAAGCCTTGAAAGCTACATTCAGTGGTTTTTCTAAAGAG CAGCAACGCCTGGGAATCCCAAAAGATCCCCGGCAGTGGACAGAGACCCATGTTCGGGAC TGGGTGATGTGGGCTGTCAATGAGTTCAGCCTGAAAGGTGTGGATTTCCAGAAGTTCTGT ATGAACGGAGCAGCCCTCTGTGCGCTGGGGAAAGACTGCTTTCTCGAGCTGGCTCCAGAC TTCGTTGGGGACATCTTGTGGGAGCATCTGGAGATCCTGCAAAAAGAGGATGTGAAGCCA TATCAAGTTAATGGAGTCAACCCCACCTACCCAGAGTCCCGCTATACCTCGGATTACTTC ATTAGCTATGGTATTGAGCATGCCCAGTGCGTCCCTCCTTCGGAGTTCTCCGAGCCCAGC TTCATCACTGAGTCCTACCAGACCCTCCATCCCATCAGCTCGGAGGAGCTCCTGTCCCTC AAGTATGAGAACGACTACCCCCCGGTCATCCTCCGGGACCCTCTGCAGACGGACCCCTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGCTGCCCGCCTAGAGGAGGGAGCCGGGCGAGGGCGAGGAGGGAGCCGGCGGGGCGC AGGCGAGGCGGGGACCGGGCGCGCGCACTTTTCCCGCAAAGTGCCAACTACCCGGGAGAG AGTTCCGGGCGCTCATCTCTGGGCGCGGGGGAAAGTCAGCAGTCAGCGGGAATTTGAGAT TTTAGGAAAGAAAGTCCGATCTCCCGGTCCCCTTTCCCTTGTTACCGATCCCTATTAAAA AGAAAAACAACAGGAATAACAGCAAACTTGCTCTAGTCTTGTCTGTACCCCACTCCTGGC ACCATGAAGGCGGCCGTCGATCTCAAACCGACACTCACAATCATCAAGACGGAAAAAGTG GATCTGGAGCTTTTCCCCTCCCCCGATATGGAATGTGCAGATGTCCCACTCCTAACTCCA AGCAGCAAAGAAATGATGTCTCAAGCCTTGAAAGCTACATTCAGTGGTTTTTCTAAAGAG CAGCAACGCCTGGGAATCCCAAAAGATCCCCGGCAGTGGACAGAGACCCATGTTCGGGAC TGGGTGATGTGGGCTGTCAATGAGTTCAGCCTGAAAGGTGTGGATTTCCAGAAGTTCTGT ATGAACGGAGCAGCCCTCTGTGCGCTGGGGAAAGACTGCTTTCTCGAGCTGGCTCCAGAC TTCGTTGGGGACATCTTGTGGGAGCATCTGGAGATCCTGCAAAAAGAGGATGTGAAGCCA TATCAAGTTAATGGAGTCAACCCCACCTACCCAGAGTCCCGCTATACCTCGGATTACTTC ATTAGCTATGGTATTGAGCATGCCCAGTGCGTCCCTCCTTCGGAGTTCTCCGAGCCCAGC TTCATCACTGAGTCCTACCAGACCCTCCATCCCATCAGCTCGGAGGAGCTCCTGTCCCTC AAGTATGAGAACGACTACCCCCCGGTCATCCTCCGGGACCCTCTGCAGACGGACCCCTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 824-960, - strand, RNAz p=0.695145 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 824-960, - strand, RNAz p=0.695145 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-383, gnl|bosTau2|chr29 (23608842-23609222) | |
| 1-383, gnl|Hg17|chr11 (127897397-127897020) | |
| 1-383, gnl|Mm7|chr9 (32597726-32598085) | |
| 496-706, gnl|bosTau2|chr29 (23647646-23647856) | |
| 496-706, gnl|canFam2|chr5 (9159574-9159335) | |
| 496-706, gnl|danRer3|chrNA (223182859-223182642) | |
| 496-706, gnl|dasNov1|scaffold_1605 (45217-44975) | |
| 496-706, gnl|echTel1|scaffold_310627 (95196-94957) | |
| 496-706, gnl|fr1|chrUn (10175825-10176038) | |
| 496-706, gnl|galGal2|chr24 (888492-888728) | |
| 496-706, gnl|hg17|chr11 (127864388-127864627) | |
| 496-706, gnl|Hg17|chr11 (127864605-127864395) | |
| 496-706, gnl|loxAfr1|scaffold_4089 (38233-38031) | |
| 496-706, gnl|mm7|chr9 (32631886-32631647) | |
| 496-706, gnl|Mm7|chr9 (32631667-32631877) | |
| 496-706, gnl|monDom2|scaffold_15 (16566868-16567105) | |
| 496-706, gnl|oryCun1|scaffold_204138 (53357-53595) | |
| 496-706, gnl|panTro1|chr9_random (8083785-8083546) | |
| 496-706, gnl|rheMac2|chr14 (126621371-126621610) | |
| 496-706, gnl|rn3|chr8 (32526032-32525790) | |
| 496-706, gnl|tetNig1|chrUn_random (14199702-14199930) | |
| 496-706, gnl|xenTro1|scaffold_383 (1193959-1193728) | |
| 785-960, gnl|bosTau2|chr29 (23652773-23652948) | |
| 785-960, gnl|canFam2|chr5 (9163852-9163590) | |
| 785-960, gnl|danRer3|chrNA (223187056-223186799) | |
| 785-960, gnl|dasNov1|scaffold_1605 (49071-48809) | |
| 785-960, gnl|echTel1|scaffold_310627 (99556-99294) | |
| 785-960, gnl|fr1|chrUn (10175113-10175372) | |
| 785-960, gnl|galGal2|chr24 (884774-885036) | |
| 785-960, gnl|hg17|chr11 (127859921-127860183) | |
| 785-960, gnl|Hg17|chr11 (127860176-127860001) | |
| 785-960, gnl|mm7|chr9 (32635819-32635557) | |
| 785-960, gnl|Mm7|chr9 (32635562-32635737) | |
| 785-960, gnl|monDom2|scaffold_15 (16562339-16562619) | |
| 785-960, gnl|oryCun1|scaffold_204138 (47994-48256) | |
| 785-960, gnl|panTro1|chr9 (129988285-129988552) | |
| 785-960, gnl|rheMac2|chr14 (126616735-126616997) | |
| 785-960, gnl|rn3|chr8 (32529916-32529654) | |
| 785-960, gnl|tetNig1|chrUn_random (14198340-14198599) | |
| 785-960, gnl|xenTro1|scaffold_383 (1198363-1198108) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-383, gnl|bosTau2|chr29 (23608842-23609222) | |
| 1-383, gnl|Hg17|chr11 (127897397-127897020) | |
| 1-383, gnl|Mm7|chr9 (32597726-32598085) | |
| 496-706, gnl|bosTau2|chr29 (23647646-23647856) | |
| 496-706, gnl|canFam2|chr5 (9159574-9159335) | |
| 496-706, gnl|danRer3|chrNA (223182859-223182642) | |
| 496-706, gnl|dasNov1|scaffold_1605 (45217-44975) | |
| 496-706, gnl|echTel1|scaffold_310627 (95196-94957) | |
| 496-706, gnl|fr1|chrUn (10175825-10176038) | |
| 496-706, gnl|galGal2|chr24 (888492-888728) | |
| 496-706, gnl|hg17|chr11 (127864388-127864627) | |
| 496-706, gnl|Hg17|chr11 (127864605-127864395) | |
| 496-706, gnl|loxAfr1|scaffold_4089 (38233-38031) | |
| 496-706, gnl|mm7|chr9 (32631886-32631647) | |
| 496-706, gnl|Mm7|chr9 (32631667-32631877) | |
| 496-706, gnl|monDom2|scaffold_15 (16566868-16567105) | |
| 496-706, gnl|oryCun1|scaffold_204138 (53357-53595) | |
| 496-706, gnl|panTro1|chr9_random (8083785-8083546) | |
| 496-706, gnl|rheMac2|chr14 (126621371-126621610) | |
| 496-706, gnl|rn3|chr8 (32526032-32525790) | |
| 496-706, gnl|tetNig1|chrUn_random (14199702-14199930) | |
| 496-706, gnl|xenTro1|scaffold_383 (1193959-1193728) | |
| 785-960, gnl|bosTau2|chr29 (23652773-23652948) | |
| 785-960, gnl|canFam2|chr5 (9163852-9163590) | |
| 785-960, gnl|danRer3|chrNA (223187056-223186799) | |
| 785-960, gnl|dasNov1|scaffold_1605 (49071-48809) | |
| 785-960, gnl|echTel1|scaffold_310627 (99556-99294) | |
| 785-960, gnl|fr1|chrUn (10175113-10175372) | |
| 785-960, gnl|galGal2|chr24 (884774-885036) | |
| 785-960, gnl|hg17|chr11 (127859921-127860183) | |
| 785-960, gnl|Hg17|chr11 (127860176-127860001) | |
| 785-960, gnl|mm7|chr9 (32635819-32635557) | |
| 785-960, gnl|Mm7|chr9 (32635562-32635737) | |
| 785-960, gnl|monDom2|scaffold_15 (16562339-16562619) | |
| 785-960, gnl|oryCun1|scaffold_204138 (47994-48256) | |
| 785-960, gnl|panTro1|chr9 (129988285-129988552) | |
| 785-960, gnl|rheMac2|chr14 (126616735-126616997) | |
| 785-960, gnl|rn3|chr8 (32529916-32529654) | |
| 785-960, gnl|tetNig1|chrUn_random (14198340-14198599) | |
| 785-960, gnl|xenTro1|scaffold_383 (1198363-1198108) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |