Non-Coding RNA Search

Ss1.1-reep01c_i19.5

Sequence:


               
               TAGGTGCTGGACAGGAACAAGGCTCGGTTGAGATGGGCCGTGGTCTTGAAGGGACAAGCC
TCTGTGCTCAACGTGCCCAGCTTCACCCCGCAGTGACGAACTGAAGCCAGAGAGTCTGTC
AAGCTCTTCATCCACTCTGTTCTGGCTTCCTTCCTGGGGTGGAGGGTGGCAGAAAGGCCC
AGGACAGAGAATGGATACTCTGGGGGTGCTGTCATTCGGCAGCCAGATTCTGAACCAAGC
AAAATCCTATTCGCCACTGGCTCCCCCAAAAAATGGGCAGATCTGGGGCTGTTCTCTGAG
GATGGAGCTCGCCAGCCAGATCAATGGCATGACACCATGGAGACCACCCGGGCCCCGAAC
TTGGGCCAGTGAATAAGGACAAAACTAAGGACAAAACCATCTCAGTTGGTGGAAAGCCCA
TGGCTCTGGAACATGGCGGGGTGTTTCCTGCTCACCCGCCCCCACCCCTACCGGGATGGT
TGGCTGGGATGGGAAAGACAGTCGATCTTCACAGGACAAAGGGCCTGATGGGGGTGGCAG
CTTTGAGGACTTACTCAACCTGCTGTGCCAGCATATCCCAGCTCTCTGCGCAACTGTCCC
CAAGCCCCCGGCTCTTGTGTCAGCGTCTTAGGCCAGTATCGTCAGCCTTTCCCACTTCAC
TCTTTCTGCCCGTTCTTCCTCTGGACCTTGAGCAGTCGTCTCTCTGGGATCCGCCACGTG
GATACTGGGGTGCCATTACCCCTAAGAAAAGACTGAGCCAGGAATTGCATACCCCACCCC
TCCAAGGCCTGGACCTGGTTCCTGAGAGGGGCGCTCTTTTCCGCCCAATGCCTGATGTTT
ACTGGACTCTGAATGGGCCTCTGCTCCTTCCCTAGGCTCTTTGCTGTCAGCCGTAAGGTG
GGGGATTATGGCCTGGTTTAACGCCACCCATCTCTTCAGGTCTCCAGAGCTCACACCAAC
TCACCCGAACCTGTGAGTCTCTTTCTAGTGCTTGGGGTGTGAAGAGGGGTGATTCTGGTC
AGCTGACCACTCCCCGAGAGGATGCTGGACCTTCAGACAGAGGAAGGTCCAGCCTGAGCC
CAGGGTGGGAGCTCAAGGGAAGGGAGTCATTGAGGAAGGTAAGCCAGGGCAGGGTGGCAG
GAAGGCAGGTGTGGCAAGCTGCCAGCTGTGAAGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGTGCTGGACAGGAACAAGGCTCGGTTGAGATGGGCCGTGGTCTTGAAGGGACAAGCC
TCTGTGCTCAACGTGCCCAGCTTCACCCCGCAGTGACGAACTGAAGCCAGAGAGTCTGTC
AAGCTCTTCATCCACTCTGTTCTGGCTTCCTTCCTGGGGTGGAGGGTGGCAGAAAGGCCC
AGGACAGAGAATGGATACTCTGGGGGTGCTGTCATTCGGCAGCCAGATTCTGAACCAAGC
AAAATCCTATTCGCCACTGGCTCCCCCAAAAAATGGGCAGATCTGGGGCTGTTCTCTGAG
GATGGAGCTCGCCAGCCAGATCAATGGCATGACACCATGGAGACCACCCGGGCCCCGAAC
TTGGGCCAGTGAATAAGGACAAAACTAAGGACAAAACCATCTCAGTTGGTGGAAAGCCCA
TGGCTCTGGAACATGGCGGGGTGTTTCCTGCTCACCCGCCCCCACCCCTACCGGGATGGT
TGGCTGGGATGGGAAAGACAGTCGATCTTCACAGGACAAAGGGCCTGATGGGGGTGGCAG
CTTTGAGGACTTACTCAACCTGCTGTGCCAGCATATCCCAGCTCTCTGCGCAACTGTCCC
CAAGCCCCCGGCTCTTGTGTCAGCGTCTTAGGCCAGTATCGTCAGCCTTTCCCACTTCAC
TCTTTCTGCCCGTTCTTCCTCTGGACCTTGAGCAGTCGTCTCTCTGGGATCCGCCACGTG
GATACTGGGGTGCCATTACCCCTAAGAAAAGACTGAGCCAGGAATTGCATACCCCACCCC
TCCAAGGCCTGGACCTGGTTCCTGAGAGGGGCGCTCTTTTCCGCCCAATGCCTGATGTTT
ACTGGACTCTGAATGGGCCTCTGCTCCTTCCCTAGGCTCTTTGCTGTCAGCCGTAAGGTG
GGGGATTATGGCCTGGTTTAACGCCACCCATCTCTTCAGGTCTCCAGAGCTCACACCAAC
TCACCCGAACCTGTGAGTCTCTTTCTAGTGCTTGGGGTGTGAAGAGGGGTGATTCTGGTC
AGCTGACCACTCCCCGAGAGGATGCTGGACCTTCAGACAGAGGAAGGTCCAGCCTGAGCC
CAGGGTGGGAGCTCAAGGGAAGGGAGTCATTGAGGAAGGTAAGCCAGGGCAGGGTGGCAG
GAAGGCAGGTGTGGCAAGCTGCCAGCTGTGAAGTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               634-749, - strand, RNAz p=0.556042

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               634-749, - strand, RNAz p=0.556042

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               9-267, gnl|bosTau2|chr2 (57619227-57619477)
               

               
               9-267, gnl|canFam2|chr37 (26577160-26578058)
               

               
               9-267, gnl|echTel1|scaffold_207342 (2069-2903)
               

               
               9-267, gnl|hg17|chr2 (217364759-217365660)
               

               
               9-267, gnl|Hg17|chr2 (217365157-217364909)
               

               
               9-267, gnl|mm7|chr1 (73102110-73103006)
               

               
               9-267, gnl|Mm7|chr1 (73102562-73102280)
               

               
               9-267, gnl|monDom2|scaffold_39 (4370229-4369165)
               

               
               9-267, gnl|oryCun1|scaffold_208629 (83256-82425)
               

               
               9-267, gnl|panTro1|chr13 (107519501-107520410)
               

               
               9-267, gnl|rheMac2|chr12 (80481143-80482041)
               

               
               9-267, gnl|rn3|chr9 (72148783-72149647)
               


               
               322-1174, gnl|bosTau2|chr2 (57619591-57620432)
               

               
               322-1174, gnl|Hg17|chr2 (217364791-217363936)
               

               
               322-1174, gnl|Mm7|chr1 (73102142-73101308)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-267, gnl|bosTau2|chr2 (57619227-57619477)
               

               
               9-267, gnl|canFam2|chr37 (26577160-26578058)
               

               
               9-267, gnl|echTel1|scaffold_207342 (2069-2903)
               

               
               9-267, gnl|hg17|chr2 (217364759-217365660)
               

               
               9-267, gnl|Hg17|chr2 (217365157-217364909)
               

               
               9-267, gnl|mm7|chr1 (73102110-73103006)
               

               
               9-267, gnl|Mm7|chr1 (73102562-73102280)
               

               
               9-267, gnl|monDom2|scaffold_39 (4370229-4369165)
               

               
               9-267, gnl|oryCun1|scaffold_208629 (83256-82425)
               

               
               9-267, gnl|panTro1|chr13 (107519501-107520410)
               

               
               9-267, gnl|rheMac2|chr12 (80481143-80482041)
               

               
               9-267, gnl|rn3|chr9 (72148783-72149647)
               


               
               322-1174, gnl|bosTau2|chr2 (57619591-57620432)
               

               
               322-1174, gnl|Hg17|chr2 (217364791-217363936)
               

               
               322-1174, gnl|Mm7|chr1 (73102142-73101308)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               eep (0.245128)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)

	9-267, gnl\|bosTau2\|chr2 (57619227-57619477)
	9-267, gnl\|canFam2\|chr37 (26577160-26578058)
	9-267, gnl\|echTel1\|scaffold_207342 (2069-2903)
	9-267, gnl\|hg17\|chr2 (217364759-217365660)
	9-267, gnl\|Hg17\|chr2 (217365157-217364909)
	9-267, gnl\|mm7\|chr1 (73102110-73103006)
	9-267, gnl\|Mm7\|chr1 (73102562-73102280)
	9-267, gnl\|monDom2\|scaffold_39 (4370229-4369165)
	9-267, gnl\|oryCun1\|scaffold_208629 (83256-82425)
	9-267, gnl\|panTro1\|chr13 (107519501-107520410)
	9-267, gnl\|rheMac2\|chr12 (80481143-80482041)
	9-267, gnl\|rn3\|chr9 (72148783-72149647)

	322-1174, gnl\|bosTau2\|chr2 (57619591-57620432)
	322-1174, gnl\|Hg17\|chr2 (217364791-217363936)
	322-1174, gnl\|Mm7\|chr1 (73102142-73101308)

	eep (0.245128)
	nmm (0.132802)
	ese (0.126502)
	eru (0.120048)
	med (0.116252)