Non-Coding RNA Search

Ss1.1-reep01c_o15.5

Sequence:


               
               GTTTTTCTAGCATTTGTCTCTAACAAATGATAAAATAATTACTCATGGCCCTCTCTGCCA
TGGTCTTTCATTTTCACAGTGAAATTAGACCCCTTTACTTCACCATTGTGCCACTACAAA
TTAAGTGTAAAAAAAAAAAAAAAAGAAAAAAAAAAGCAAGACTATCCACACCAGTAGAAA
ATGTGCTTCTCTACCTATAAGTGACGTACGTAATTGTAGGTAATGCTTGCCACGGAATTT
TCAAGAAGATGATTGGTATCAGACAGTTTTCATCTTGTCTAAAACGTGCTGGTGGCCTTT
TGTGATGGTGTTACAACCCTCAGGGGGCTTAGGAGGATGTCGATGCGACTTTGTAGCAGC
TTTTAATTTCAAAAACAATTCAAAAGTCTGAAGGGCAGCCTTCGCTGCCTCTCAGCCCCA
GTTAGTCAAACCCCAGCGACCTTTGCCCCTGGTTGCCAAGGGCTTTGCAACACGAAGCAG
GGAAATAAGGATCTGTCTGTTTAGTGGATACCGTGTATCCTTTAATAGACCAGGTAATAG
TCCGTGTTAGTTTAGACTATTGTTTTGTACTGTACTTTCTTGGGTGGCAGAGGAAAGAAA
AGTAAAACGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTCTAGCATTTGTCTCTAACAAATGATAAAATAATTACTCATGGCCCTCTCTGCCA
TGGTCTTTCATTTTCACAGTGAAATTAGACCCCTTTACTTCACCATTGTGCCACTACAAA
TTAAGTGTAAAAAAAAAAAAAAAAGAAAAAAAAAAGCAAGACTATCCACACCAGTAGAAA
ATGTGCTTCTCTACCTATAAGTGACGTACGTAATTGTAGGTAATGCTTGCCACGGAATTT
TCAAGAAGATGATTGGTATCAGACAGTTTTCATCTTGTCTAAAACGTGCTGGTGGCCTTT
TGTGATGGTGTTACAACCCTCAGGGGGCTTAGGAGGATGTCGATGCGACTTTGTAGCAGC
TTTTAATTTCAAAAACAATTCAAAAGTCTGAAGGGCAGCCTTCGCTGCCTCTCAGCCCCA
GTTAGTCAAACCCCAGCGACCTTTGCCCCTGGTTGCCAAGGGCTTTGCAACACGAAGCAG
GGAAATAAGGATCTGTCTGTTTAGTGGATACCGTGTATCCTTTAATAGACCAGGTAATAG
TCCGTGTTAGTTTAGACTATTGTTTTGTACTGTACTTTCTTGGGTGGCAGAGGAAAGAAA
AGTAAAACGTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-117, - strand, RNAz p=0.966982
               

               
               354-611, + strand, RNAz p=0.963697

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, - strand, RNAz p=0.966982
               

               
               354-611, + strand, RNAz p=0.963697

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-611, gnl|bosTau2|chr7 (67401542-67402139)
               

               
               1-611, gnl|Hg17|chr5 (106742395-106741806)
               

               
               1-611, gnl|Mm7|chr17 (60811985-60811394)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-611, gnl|bosTau2|chr7 (67401542-67402139)
               

               
               1-611, gnl|Hg17|chr5 (106742395-106741806)
               

               
               1-611, gnl|Mm7|chr17 (60811985-60811394)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	1-117, - strand, RNAz p=0.966982
	354-611, + strand, RNAz p=0.963697

	1-611, gnl\|bosTau2\|chr7 (67401542-67402139)
	1-611, gnl\|Hg17\|chr5 (106742395-106741806)
	1-611, gnl\|Mm7\|chr17 (60811985-60811394)

	ece (0.229305)
	cmu (0.186393)
	ste (0.135208)
	tra (0.123092)
	eep (0.122564)
	eru (0.120048)
	ecc (0.115035)