Non-Coding RNA Search

Ss1.1-reep02c_i8.5.5

Sequence:


               
               TGACTCAAAGAGGAGGTGGTTGTGGCCCGTGACCTTTCTCTTCCCTGCTGGTACCTGCCT
TCAGATACCCTTCAGGAGTCCAGGAATTGGCTTTTAGGGGCCACCCTTGCCACAAAACCC
CACCCCACCGGACAAGGGGTACCAGCACCAGCTCCGCTCCTTCCCACCTGCCATCTGAGG
TCTGTTGGTTTTGCGGCTTGATTTTTGTGGTGGGTTTGGCTTTGATTTGGGGTTTTTTGT
TGTATTTTTTTTCTTTTGGTTTTGAAAATGAGAACTGATGTCTCCATTTCCACTATTCCT
GGTAAAGATTTGGGGGCATTTTTATTCAGTAGGGCTTCTCTAATCTCCCAGCTTGCTTCC
CACAAACATCTGTCTGGAAGTTCTTAGAATTCTAATTCTAGGACAGAAAGTGAGCTTCCT
GAAGTAGACAGTCAGTCACAGCCAGCGGTTGCAGGGGGCACCAGGGCAGTGAGCAGGAGA
GAAGTCTACAGCCACTGCTCCCAGCAGTGGGAACCAGCCACATGTGCCAGAGTCTCTCCT
GGCTGAGTTTTGTTTAGACAAACTCGGTTGATTTGAACTGATTTCAGGTGCGTGCATTTT
CCTCTTAGTACTTACATGAGACTGTTACTAACCAACAGGTAGCTCTCCTCTGGGCAGGGA
CAAGAGCTCAGGTGGGATGTGTGACAGGCCAGGGGGAAAGGAGAGTGCCCCGTCTCAGGG
ACAGACTCATGGCCTGGGGGCATGGGGTCTGGAACCATGGGGCTTTCAGGGTGGAGCCCA
AGCCTGGGCTTTGTTGCCCAGAGCAGTGGCGAGGTTGGAAATCCAGCTCACCTCAAACAG
GCTGGTGTGAGCTCGCCTGTCAATGGCCAGCTGACCTGTTGGAAGAGCTGCAAGGGCTTA
CAGAGCTGAAACCTGTGGAATGAAGCTGGGAAAAGAGGCCGGGGCATGCACATCAGGAAG
CTGGTACACCGAATATTCTGTGCCCTCCAGGTCAGAGTAGCAGCTCTCATAGCACAGGAT
CGGGCCCCCAAATTTCCCCTCGATCTGTCACCAGCTCACTAACACTTGTCCCTGCCTTCT
TGTCTATAAACTGGACCAGATCCCCATGCCCTTCCAGTGCTGAGAAGCCAGGATTTGGAC
AAGCCACCATGAATGGTGTTCTTCCAAGCCTCTTTCCCTTTCCTGCCTCTCTGGTTAGAG
AACTTGGGGTTTGCCAATTATTTGGATTTTTTTTTTCCTTCTTGCAATTGTGTGTGTGTC
ATTGTGCATGAAGAAAAACAGACTGTCCAGGTGGAAATGGTAAAGAGGGGAGAAGAGTTC
ATTTCCAGGATAAAAGATTTGGCGGCAGTTTTCCTGAAGTGACTCAGGCATACCACAGTA
ACAACTCTTGCTGCAATTTTATTTTTATTTCATTTTGAGAAATAAAGATTTCTTCCAAGC
CACACGAGGTCTCTGCCACCCACCCACCCACAAAGCAGGATCTGAATTTATCAGCCAAGG
GCCCATAGAGCCGCAGGGACCTGTCAGGGAATCTTGCCCACACACCCCCAGTCCCCCACT
GTGTGTTCTTAGGGGCAGCTGGGGGTGAGGGGGTGACAGTCCACCTTGGGAATGGAGCCA
GAGCTATGGCTTGACCAACACCAAGGAGTGCTCGTGGGACTAGCTGCCCAGGATCTCAGC
CCCAGGCTGGGTGGTTTTACAAATCTCTCTCAAATGTTTTATTTTGGTGACAAAAATGAA
GGAGCTTTGTAAATTAAAAAAAAAAAAGATTATGAATCATTATCAAGTAGTTTACATTTC
TTGACAAAATAGGAACTATGGCAGCAGAATCAAATTGGCAAAATCCTTAGATTAAGTAGG
CAATAATTAGGTCTGCTGTTTTGGCCTTTTGTAGTAAGAGAAATGGTGGTAGTGTTTAGA
TATGTGTTTGGTCTTGCTTCTTGTATTGCATTTTTCAATAAATTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACTCAAAGAGGAGGTGGTTGTGGCCCGTGACCTTTCTCTTCCCTGCTGGTACCTGCCT
TCAGATACCCTTCAGGAGTCCAGGAATTGGCTTTTAGGGGCCACCCTTGCCACAAAACCC
CACCCCACCGGACAAGGGGTACCAGCACCAGCTCCGCTCCTTCCCACCTGCCATCTGAGG
TCTGTTGGTTTTGCGGCTTGATTTTTGTGGTGGGTTTGGCTTTGATTTGGGGTTTTTTGT
TGTATTTTTTTTCTTTTGGTTTTGAAAATGAGAACTGATGTCTCCATTTCCACTATTCCT
GGTAAAGATTTGGGGGCATTTTTATTCAGTAGGGCTTCTCTAATCTCCCAGCTTGCTTCC
CACAAACATCTGTCTGGAAGTTCTTAGAATTCTAATTCTAGGACAGAAAGTGAGCTTCCT
GAAGTAGACAGTCAGTCACAGCCAGCGGTTGCAGGGGGCACCAGGGCAGTGAGCAGGAGA
GAAGTCTACAGCCACTGCTCCCAGCAGTGGGAACCAGCCACATGTGCCAGAGTCTCTCCT
GGCTGAGTTTTGTTTAGACAAACTCGGTTGATTTGAACTGATTTCAGGTGCGTGCATTTT
CCTCTTAGTACTTACATGAGACTGTTACTAACCAACAGGTAGCTCTCCTCTGGGCAGGGA
CAAGAGCTCAGGTGGGATGTGTGACAGGCCAGGGGGAAAGGAGAGTGCCCCGTCTCAGGG
ACAGACTCATGGCCTGGGGGCATGGGGTCTGGAACCATGGGGCTTTCAGGGTGGAGCCCA
AGCCTGGGCTTTGTTGCCCAGAGCAGTGGCGAGGTTGGAAATCCAGCTCACCTCAAACAG
GCTGGTGTGAGCTCGCCTGTCAATGGCCAGCTGACCTGTTGGAAGAGCTGCAAGGGCTTA
CAGAGCTGAAACCTGTGGAATGAAGCTGGGAAAAGAGGCCGGGGCATGCACATCAGGAAG
CTGGTACACCGAATATTCTGTGCCCTCCAGGTCAGAGTAGCAGCTCTCATAGCACAGGAT
CGGGCCCCCAAATTTCCCCTCGATCTGTCACCAGCTCACTAACACTTGTCCCTGCCTTCT
TGTCTATAAACTGGACCAGATCCCCATGCCCTTCCAGTGCTGAGAAGCCAGGATTTGGAC
AAGCCACCATGAATGGTGTTCTTCCAAGCCTCTTTCCCTTTCCTGCCTCTCTGGTTAGAG
AACTTGGGGTTTGCCAATTATTTGGATTTTTTTTTTCCTTCTTGCAATTGTGTGTGTGTC
ATTGTGCATGAAGAAAAACAGACTGTCCAGGTGGAAATGGTAAAGAGGGGAGAAGAGTTC
ATTTCCAGGATAAAAGATTTGGCGGCAGTTTTCCTGAAGTGACTCAGGCATACCACAGTA
ACAACTCTTGCTGCAATTTTATTTTTATTTCATTTTGAGAAATAAAGATTTCTTCCAAGC
CACACGAGGTCTCTGCCACCCACCCACCCACAAAGCAGGATCTGAATTTATCAGCCAAGG
GCCCATAGAGCCGCAGGGACCTGTCAGGGAATCTTGCCCACACACCCCCAGTCCCCCACT
GTGTGTTCTTAGGGGCAGCTGGGGGTGAGGGGGTGACAGTCCACCTTGGGAATGGAGCCA
GAGCTATGGCTTGACCAACACCAAGGAGTGCTCGTGGGACTAGCTGCCCAGGATCTCAGC
CCCAGGCTGGGTGGTTTTACAAATCTCTCTCAAATGTTTTATTTTGGTGACAAAAATGAA
GGAGCTTTGTAAATTAAAAAAAAAAAAGATTATGAATCATTATCAAGTAGTTTACATTTC
TTGACAAAATAGGAACTATGGCAGCAGAATCAAATTGGCAAAATCCTTAGATTAAGTAGG
CAATAATTAGGTCTGCTGTTTTGGCCTTTTGTAGTAAGAGAAATGGTGGTAGTGTTTAGA
TATGTGTTTGGTCTTGCTTCTTGTATTGCATTTTTCAATAAATTAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               433-551, - strand, RNAz p=0.897504
               

               
               707-862, - strand, RNAz p=0.754901
               

               
               1506-1595, - strand, RNAz p=0.6018
               

               
               1792-1908, - strand, RNAz p=0.646597

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               433-551, - strand, RNAz p=0.897504
               

               
               707-862, - strand, RNAz p=0.754901
               

               
               1506-1595, - strand, RNAz p=0.6018
               

               
               1792-1908, - strand, RNAz p=0.646597

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1871-1958, - strand, RNAmicro p=0.920592

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1871-1958, - strand, RNAmicro p=0.920592

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001003682, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001003682, -

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               11-1980, gnl|bosTau2|chr2 (77233340-77231357)
               

               
               11-1980, gnl|Hg17|chr1 (29264954-29267167)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-1980, gnl|bosTau2|chr2 (77233340-77231357)
               

               
               11-1980, gnl|Hg17|chr1 (29264954-29267167)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               nje (0.33184)
               

               
               nco (0.323468)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               nbm (0.198649)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               clu (0.119646)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.33184)
               

               
               nco (0.323468)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               nbm (0.198649)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               clu (0.119646)

	433-551, - strand, RNAz p=0.897504
	707-862, - strand, RNAz p=0.754901
	1506-1595, - strand, RNAz p=0.6018
	1792-1908, - strand, RNAz p=0.646597

	11-1980, gnl\|bosTau2\|chr2 (77233340-77231357)
	11-1980, gnl\|Hg17\|chr1 (29264954-29267167)

	nje (0.33184)
	nco (0.323468)
	fce (0.271592)
	cbe (0.239234)
	nbm (0.198649)
	sto (0.179824)
	duo (0.172801)
	eye (0.170503)
	cut (0.169924)
	cje (0.165235)
	hyp (0.142837)
	lnt (0.142308)
	ese (0.126502)
	eep (0.122564)
	clu (0.119646)