Non-Coding RNA Search

Ss1.1-reep02c_l22.5

Sequence:


               
               CTATGACATGATTACGANTTAATACGACTCACTATA------------CGAGGCCAAGAT
TCCAGAAGCAAGAGCTAGAACGAGAAGAAAAACGAGAAAGTAGAAGAATTGTGTACCAGA
ATCTTAACGAGCCAACCACATGGAGTTTAACCAGTGATCGAACCAGAAATTGGGTTCTTC
AGCAGAAAATAGAAGGAGTTTGTTATCTGAAATTCAAACACTGCATGCCCAAATGAATGG
TAGGAAAATGATTCTGAAAAGAGAACAAGAGAATGATCAACCAAGCCAAGAACTCTTGGA
ATATAATATGCAGCAGAAGCAGTCTCAAATCCTGGAGATGCAAGTGGAGCTCAGCAGTGT
GAAAGACAGAGCAACAGAACTGCAGGAACAACTGAGTTCTGAGAAAATGGTGGTTGCTGA
ACTAAAAAGTGAACTTGCACAAACTAAATTGGAACTAGAAACAACGCTCAAGGCACAGCA
TAAGCACCTAAAGGAATTAGAGGCATTCAGGTTGGAAATTAAAGATAAAACAGATGAAGT
ACATTTGCTTAATGACACATTAGCAAGTGAACAGAAAAAATCCAGAGAGCTACAGTGGGC
TTTGGAGAAAGAGAAAGCCAAACTGGGACGCAATGAAGAGCGGGATAAAGAAGAACTTGA
GGATCTGAAATTTTCACTTGAGGGTCAGAAACAAAGGAATATTCAGCTAAATCAACTTTT
GGAACAACAGAAACAACAACTAAACGAATCACAGCAGAAAATAGAATCACAAAGAATGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATGACATGATTACGANTTAATACGACTCACTATA------------CGAGGCCAAGAT
TCCAGAAGCAAGAGCTAGAACGAGAAGAAAAACGAGAAAGTAGAAGAATTGTGTACCAGA
ATCTTAACGAGCCAACCACATGGAGTTTAACCAGTGATCGAACCAGAAATTGGGTTCTTC
AGCAGAAAATAGAAGGAGTTTGTTATCTGAAATTCAAACACTGCATGCCCAAATGAATGG
TAGGAAAATGATTCTGAAAAGAGAACAAGAGAATGATCAACCAAGCCAAGAACTCTTGGA
ATATAATATGCAGCAGAAGCAGTCTCAAATCCTGGAGATGCAAGTGGAGCTCAGCAGTGT
GAAAGACAGAGCAACAGAACTGCAGGAACAACTGAGTTCTGAGAAAATGGTGGTTGCTGA
ACTAAAAAGTGAACTTGCACAAACTAAATTGGAACTAGAAACAACGCTCAAGGCACAGCA
TAAGCACCTAAAGGAATTAGAGGCATTCAGGTTGGAAATTAAAGATAAAACAGATGAAGT
ACATTTGCTTAATGACACATTAGCAAGTGAACAGAAAAAATCCAGAGAGCTACAGTGGGC
TTTGGAGAAAGAGAAAGCCAAACTGGGACGCAATGAAGAGCGGGATAAAGAAGAACTTGA
GGATCTGAAATTTTCACTTGAGGGTCAGAAACAAAGGAATATTCAGCTAAATCAACTTTT
GGAACAACAGAAACAACAACTAAACGAATCACAGCAGAAAATAGAATCACAAAGAATGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               277-436, + strand, RNAz p=0.978861

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-436, + strand, RNAz p=0.978861

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               283-412, - strand, RNAmicro p=0.909158

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               283-412, - strand, RNAmicro p=0.909158

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               277-500, gnl|bosTau2|chr4 (848219-848442)
               

               
               277-500, gnl|Hg17|chr7 (91367060-91367283)
               

               
               277-500, gnl|Mm7|chr5 (4066286-4066503)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               277-500, gnl|bosTau2|chr4 (848219-848442)
               

               
               277-500, gnl|Hg17|chr7 (91367060-91367283)
               

               
               277-500, gnl|Mm7|chr5 (4066286-4066503)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	277-500, gnl\|bosTau2\|chr4 (848219-848442)
	277-500, gnl\|Hg17\|chr7 (91367060-91367283)
	277-500, gnl\|Mm7\|chr5 (4066286-4066503)