Ss1.1-reep03c_n10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCTGCGGAGCCTGGAATATGGTCGGGGAAATGGAAACGAAGGAGAAGCCGAAGCCCAC CCCAGATTACCTGATGCAGCTGATGAACGACAAGAAGCTCATGAGCAGCCTGCCCAACTT CTGCGGGATCTTCAACCACCTCGAGCGGCTGCTGGACGAAGAAATTAGCAGAGTACGGAA AGACATGTACAATGACACATTAAATGGCAGTACAGAGAAAAGGAGTGCAGAGTTGCCTGA TGCTGTGGGACCTATTGTTCAGTTACAAGAGAAACTTTATGTGCCTGTAAAAGAATACCC AGATTTTAATTTTGTTGGGAGAATCCTTGGACCTAGAGGACTTACTGCTAAACAGCTTGA AGCAGAAACAGGATGTAAGATAATGGTCCGAGGCAAAGGCTCAATGAGGGATAAAAAGAA GGAGGAGCAAAATCGAGGCAAGCCTAATTGGGAACATCTGAATGAAGATTTACATGTACT GATCACTGTGGAAGATGCTCAGAACAGAGCAGAGATCAAGCTGAAGAGAGCTGTTGAGGA AGTGAAGAAATTACTGGTACCTGCAGCAGAGGGAGAAGACAGCCTGAAGAAGATGCAGCT GATGGAGCTTGCGATTCTCAATGGCACCTACAGAGATGCCAACATTAAATCACCAGCCCT TGCCTTTTCTCTTGCAGCAACAGCCCAGGCTGCTCCAAGGATTATTACTGGGCCTGCGCC TGTTCTCCCACCAGCTGCCCTGCGCACTCCTACGCCAGCTGGCCCTACCATAATGCCTTT GATCAGACAGATACAGACCGCTGTCATGCCAAACGGAACTCCTCACCCAACTGCTGCAAT AGTTCCTCCAGGGCCCGAAGCTGGTTTAATCTACACACCCTATGAATACCCCTACACGTT GGCACCAGCTACATCAATCCTTGAGTACCCTATTGAACCTAGCGGTGTATTAGGTGCGGT GGCTACTAAAGTTCGAAGGCACGATATGCGTGTCCATCCTTACCAAAGGATTGTGACCGC AGACCGAGCCGCCACCGGCAACTAACCTATGACCTTCTGACCTCTGAACTCTTCACCCAA TGATGACCTGACCATGCCTGCCTGCTGATCAGTTAACTGGTAATCGCCTTTGCTTGCCTG TCGTCAGTGCAGCGAGCTGAGGCACTTGTCCGTTCGTCTTACCATCTAACCAAACAAAAG ACAAAGAAATTGTTGTCCTCCAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCTGCGGAGCCTGGAATATGGTCGGGGAAATGGAAACGAAGGAGAAGCCGAAGCCCAC CCCAGATTACCTGATGCAGCTGATGAACGACAAGAAGCTCATGAGCAGCCTGCCCAACTT CTGCGGGATCTTCAACCACCTCGAGCGGCTGCTGGACGAAGAAATTAGCAGAGTACGGAA AGACATGTACAATGACACATTAAATGGCAGTACAGAGAAAAGGAGTGCAGAGTTGCCTGA TGCTGTGGGACCTATTGTTCAGTTACAAGAGAAACTTTATGTGCCTGTAAAAGAATACCC AGATTTTAATTTTGTTGGGAGAATCCTTGGACCTAGAGGACTTACTGCTAAACAGCTTGA AGCAGAAACAGGATGTAAGATAATGGTCCGAGGCAAAGGCTCAATGAGGGATAAAAAGAA GGAGGAGCAAAATCGAGGCAAGCCTAATTGGGAACATCTGAATGAAGATTTACATGTACT GATCACTGTGGAAGATGCTCAGAACAGAGCAGAGATCAAGCTGAAGAGAGCTGTTGAGGA AGTGAAGAAATTACTGGTACCTGCAGCAGAGGGAGAAGACAGCCTGAAGAAGATGCAGCT GATGGAGCTTGCGATTCTCAATGGCACCTACAGAGATGCCAACATTAAATCACCAGCCCT TGCCTTTTCTCTTGCAGCAACAGCCCAGGCTGCTCCAAGGATTATTACTGGGCCTGCGCC TGTTCTCCCACCAGCTGCCCTGCGCACTCCTACGCCAGCTGGCCCTACCATAATGCCTTT GATCAGACAGATACAGACCGCTGTCATGCCAAACGGAACTCCTCACCCAACTGCTGCAAT AGTTCCTCCAGGGCCCGAAGCTGGTTTAATCTACACACCCTATGAATACCCCTACACGTT GGCACCAGCTACATCAATCCTTGAGTACCCTATTGAACCTAGCGGTGTATTAGGTGCGGT GGCTACTAAAGTTCGAAGGCACGATATGCGTGTCCATCCTTACCAAAGGATTGTGACCGC AGACCGAGCCGCCACCGGCAACTAACCTATGACCTTCTGACCTCTGAACTCTTCACCCAA TGATGACCTGACCATGCCTGCCTGCTGATCAGTTAACTGGTAATCGCCTTTGCTTGCCTG TCGTCAGTGCAGCGAGCTGAGGCACTTGTCCGTTCGTCTTACCATCTAACCAAACAAAAG ACAAAGAAATTGTTGTCCTCCAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 654-812, - strand, RNAz p=0.91401 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 654-812, - strand, RNAz p=0.91401 |
| Aligned organism(s): 74 entry(ies) | More info |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
| 160-304, gnl|bosTau2|chr9 (61904049-61903905) | |
| 160-304, gnl|canFam2|chr1 (54884323-54884497) | |
| 160-304, gnl|danRer3|chrNA (163736249-163736079) | |
| 160-304, gnl|dasNov1|scaffold_131310 (3994-3820) | |
| 160-304, gnl|echTel1|scaffold_163569 (4574-4741) | |
| 160-304, gnl|fr1|chrUn (116403628-116403462) | |
| 160-304, gnl|galGal2|chr3 (40322184-40322009) | |
| 160-304, gnl|hg17|chr6 (163846700-163846874) | |
| 160-304, gnl|Hg17|chr6 (163846720-163846864) | |
| 160-304, gnl|loxAfr1|scaffold_66550 (5245-5404) | |
| 160-304, gnl|mm7|chr17 (9001728-9001554) | |
| 160-304, gnl|Mm7|chr17 (9001706-9001562) | |
| 160-304, gnl|monDom2|scaffold_0 (39381804-39381624) | |
| 160-304, gnl|oryCun1|scaffold_210429 (41704-41879) | |
| 160-304, gnl|panTro1|chr5 (168143197-168143371) | |
| 160-304, gnl|rheMac2|chr4 (160236846-160237020) | |
| 160-304, gnl|rn3|chr1 (44961450-44961624) | |
| 160-304, gnl|tetNig1|chrUn_random (135360440-135360598) | |
| 160-304, gnl|xenTro1|scaffold_1002 (200645-200818) | |
| 420-566, gnl|bosTau2|chr9 (61830274-61830128) | |
| 420-566, gnl|canFam2|chr1 (54960041-54960221) | |
| 420-566, gnl|danRer3|chrNA (163714933-163714747) | |
| 420-566, gnl|dasNov1|scaffold_50064 (9084-8904) | |
| 420-566, gnl|echTel1|scaffold_94834 (3253-3069) | |
| 420-566, gnl|fr1|chrUn (116392379-116392199) | |
| 420-566, gnl|galGal2|chr3 (40263036-40262853) | |
| 420-566, gnl|hg17|chr6 (163926396-163926578) | |
| 420-566, gnl|Hg17|chr6 (163926423-163926569) | |
| 420-566, gnl|loxAfr1|scaffold_3332 (30698-30881) | |
| 420-566, gnl|mm7|chr17 (8957823-8957610) | |
| 420-566, gnl|Mm7|chr17 (8957761-8957615) | |
| 420-566, gnl|monDom2|scaffold_0 (39314976-39314802) | |
| 420-566, gnl|oryCun1|scaffold_105739 (15243-15426) | |
| 420-566, gnl|panTro1|chr5 (168224155-168224339) | |
| 420-566, gnl|rheMac2|chr4 (160318070-160318249) | |
| 420-566, gnl|rn3|chr1 (45004887-45005076) | |
| 420-566, gnl|tetNig1|chr10 (7162157-7161999) | |
| 420-566, gnl|xenTro1|scaffold_1002 (234745-234924) | |
| 654-955, gnl|bosTau2|chr9 (61805536-61805235) | |
| 654-955, gnl|canFam2|chr1 (54993547-54993862) | |
| 654-955, gnl|danRer3|chrNA (163704190-163703885) | |
| 654-955, gnl|dasNov1|scaffold_7893 (96793-96478) | |
| 654-955, gnl|echTel1|scaffold_318912 (7418-7115) | |
| 654-955, gnl|fr1|chrUn (116380389-116380074) | |
| 654-955, gnl|galGal2|chr3 (40228865-40228553) | |
| 654-955, gnl|hg17|chr6 (163954853-163955168) | |
| 654-955, gnl|Hg17|chr6 (163954863-163955164) | |
| 654-955, gnl|loxAfr1|scaffold_42779 (15418-15733) | |
| 654-955, gnl|mm7|chr17 (8935194-8934879) | |
| 654-955, gnl|Mm7|chr17 (8935182-8934881) | |
| 654-955, gnl|monDom2|scaffold_0 (39274050-39273741) | |
| 654-955, gnl|oryCun1|scaffold_118081 (6955-7270) | |
| 654-955, gnl|panTro1|chr5 (168252797-168253112) | |
| 654-955, gnl|rheMac2|chr4 (160349770-160350085) | |
| 654-955, gnl|rn3|chr1 (45027044-45027359) | |
| 654-955, gnl|tetNig1|chr10 (7150156-7149841) | |
| 654-955, gnl|xenTro1|scaffold_1002 (257242-257557) | |
| 1023-1224, gnl|bosTau2|chr9 (61798628-61798427) | |
| 1023-1224, gnl|canFam2|chr1 (55000739-55000893) | |
| 1023-1224, gnl|danRer3|chrNA (163695013-163694856) | |
| 1023-1224, gnl|echTel1|scaffold_318912 (345-191) | |
| 1023-1224, gnl|fr1|chrUn (116377052-116376888) | |
| 1023-1224, gnl|galGal2|chr3 (40221207-40221055) | |
| 1023-1224, gnl|hg17|chr6 (163962126-163962280) | |
| 1023-1224, gnl|Hg17|chr6 (163962131-163962332) | |
| 1023-1224, gnl|mm7|chr17 (8928367-8928213) | |
| 1023-1224, gnl|Mm7|chr17 (8928360-8928162) | |
| 1023-1224, gnl|monDom2|scaffold_0 (39266716-39266562) | |
| 1023-1224, gnl|oryCun1|scaffold_198477 (157849-157695) | |
| 1023-1224, gnl|panTro1|chr5 (168260226-168260380) | |
| 1023-1224, gnl|rheMac2|chr4 (160357068-160357222) | |
| 1023-1224, gnl|rn3|chr1 (45033931-45034085) | |
| 1023-1224, gnl|tetNig1|chr10 (7146757-7146593) | |
| 1023-1224, gnl|xenTro1|scaffold_1002 (263698-263852) |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 160-304, gnl|bosTau2|chr9 (61904049-61903905) | |
| 160-304, gnl|canFam2|chr1 (54884323-54884497) | |
| 160-304, gnl|danRer3|chrNA (163736249-163736079) | |
| 160-304, gnl|dasNov1|scaffold_131310 (3994-3820) | |
| 160-304, gnl|echTel1|scaffold_163569 (4574-4741) | |
| 160-304, gnl|fr1|chrUn (116403628-116403462) | |
| 160-304, gnl|galGal2|chr3 (40322184-40322009) | |
| 160-304, gnl|hg17|chr6 (163846700-163846874) | |
| 160-304, gnl|Hg17|chr6 (163846720-163846864) | |
| 160-304, gnl|loxAfr1|scaffold_66550 (5245-5404) | |
| 160-304, gnl|mm7|chr17 (9001728-9001554) | |
| 160-304, gnl|Mm7|chr17 (9001706-9001562) | |
| 160-304, gnl|monDom2|scaffold_0 (39381804-39381624) | |
| 160-304, gnl|oryCun1|scaffold_210429 (41704-41879) | |
| 160-304, gnl|panTro1|chr5 (168143197-168143371) | |
| 160-304, gnl|rheMac2|chr4 (160236846-160237020) | |
| 160-304, gnl|rn3|chr1 (44961450-44961624) | |
| 160-304, gnl|tetNig1|chrUn_random (135360440-135360598) | |
| 160-304, gnl|xenTro1|scaffold_1002 (200645-200818) | |
| 420-566, gnl|bosTau2|chr9 (61830274-61830128) | |
| 420-566, gnl|canFam2|chr1 (54960041-54960221) | |
| 420-566, gnl|danRer3|chrNA (163714933-163714747) | |
| 420-566, gnl|dasNov1|scaffold_50064 (9084-8904) | |
| 420-566, gnl|echTel1|scaffold_94834 (3253-3069) | |
| 420-566, gnl|fr1|chrUn (116392379-116392199) | |
| 420-566, gnl|galGal2|chr3 (40263036-40262853) | |
| 420-566, gnl|hg17|chr6 (163926396-163926578) | |
| 420-566, gnl|Hg17|chr6 (163926423-163926569) | |
| 420-566, gnl|loxAfr1|scaffold_3332 (30698-30881) | |
| 420-566, gnl|mm7|chr17 (8957823-8957610) | |
| 420-566, gnl|Mm7|chr17 (8957761-8957615) | |
| 420-566, gnl|monDom2|scaffold_0 (39314976-39314802) | |
| 420-566, gnl|oryCun1|scaffold_105739 (15243-15426) | |
| 420-566, gnl|panTro1|chr5 (168224155-168224339) | |
| 420-566, gnl|rheMac2|chr4 (160318070-160318249) | |
| 420-566, gnl|rn3|chr1 (45004887-45005076) | |
| 420-566, gnl|tetNig1|chr10 (7162157-7161999) | |
| 420-566, gnl|xenTro1|scaffold_1002 (234745-234924) | |
| 654-955, gnl|bosTau2|chr9 (61805536-61805235) | |
| 654-955, gnl|canFam2|chr1 (54993547-54993862) | |
| 654-955, gnl|danRer3|chrNA (163704190-163703885) | |
| 654-955, gnl|dasNov1|scaffold_7893 (96793-96478) | |
| 654-955, gnl|echTel1|scaffold_318912 (7418-7115) | |
| 654-955, gnl|fr1|chrUn (116380389-116380074) | |
| 654-955, gnl|galGal2|chr3 (40228865-40228553) | |
| 654-955, gnl|hg17|chr6 (163954853-163955168) | |
| 654-955, gnl|Hg17|chr6 (163954863-163955164) | |
| 654-955, gnl|loxAfr1|scaffold_42779 (15418-15733) | |
| 654-955, gnl|mm7|chr17 (8935194-8934879) | |
| 654-955, gnl|Mm7|chr17 (8935182-8934881) | |
| 654-955, gnl|monDom2|scaffold_0 (39274050-39273741) | |
| 654-955, gnl|oryCun1|scaffold_118081 (6955-7270) | |
| 654-955, gnl|panTro1|chr5 (168252797-168253112) | |
| 654-955, gnl|rheMac2|chr4 (160349770-160350085) | |
| 654-955, gnl|rn3|chr1 (45027044-45027359) | |
| 654-955, gnl|tetNig1|chr10 (7150156-7149841) | |
| 654-955, gnl|xenTro1|scaffold_1002 (257242-257557) | |
| 1023-1224, gnl|bosTau2|chr9 (61798628-61798427) | |
| 1023-1224, gnl|canFam2|chr1 (55000739-55000893) | |
| 1023-1224, gnl|danRer3|chrNA (163695013-163694856) | |
| 1023-1224, gnl|echTel1|scaffold_318912 (345-191) | |
| 1023-1224, gnl|fr1|chrUn (116377052-116376888) | |
| 1023-1224, gnl|galGal2|chr3 (40221207-40221055) | |
| 1023-1224, gnl|hg17|chr6 (163962126-163962280) | |
| 1023-1224, gnl|Hg17|chr6 (163962131-163962332) | |
| 1023-1224, gnl|mm7|chr17 (8928367-8928213) | |
| 1023-1224, gnl|Mm7|chr17 (8928360-8928162) | |
| 1023-1224, gnl|monDom2|scaffold_0 (39266716-39266562) | |
| 1023-1224, gnl|oryCun1|scaffold_198477 (157849-157695) | |
| 1023-1224, gnl|panTro1|chr5 (168260226-168260380) | |
| 1023-1224, gnl|rheMac2|chr4 (160357068-160357222) | |
| 1023-1224, gnl|rn3|chr1 (45033931-45034085) | |
| 1023-1224, gnl|tetNig1|chr10 (7146757-7146593) | |
| 1023-1224, gnl|xenTro1|scaffold_1002 (263698-263852) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| hea (0.613497) | |
| ssp (0.271039) | |
| eep (0.245128) | |
| ece (0.229305) | |
| mas (0.210305) | |
| isp (0.150376) | |
| spl (0.143184) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| jca (0.11396) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.613497) | |
| ssp (0.271039) | |
| eep (0.245128) | |
| ece (0.229305) | |
| mas (0.210305) | |
| isp (0.150376) | |
| spl (0.143184) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| jca (0.11396) |