Non-Coding RNA Search

Ss1.1-reep04c_f24.5

Sequence:


               
               CGCACGGCTCAAACGCAGGCCGACACCGAGGTACTTAGCAAGGCCAGGCTCTCCCACGAC
TGCAGGGCCCCTCCGCCAGCCCGCCCTGGGGCATGCACAGCAGGTGGTCATCCGAGCACA
CCAGGAACAGCTGCATGAAATGGCCAAGCTGGGCTTCAAGGAGGAGACCCTGATGAGCCA
GCTGGCTCCTAATGATTTTGAAGATTTTGTGACCCAGTTGGATGAAATCATGGCTTTGAA
GTCCAAGTGCATCCAGAGTCTGAGGAGCCAGTTGCAGCTATACCTGGCCTGCCACAGGCC
TGCCACAGCCCCTGAGAGGACAGCGGTATCTTAAAGCAAAACCCAGTATGGGGTGGCTAG
GCTCCTGAGGGCTGAGGGCCTCTGCCAGGTCCCCCTGCAGATATACTAGAACCCACTACC
TAGTCCTGCCCATTCTGGCCTCTCCCGAGCCACACACAGCCTTGGCTGGGCCCAGCTCCT
TTCTTGGGGCCAGGTATATGCCCCTCAGTTCTAAGCACAGGAGCATCTATAAGGAAGGAC
AGATCAGCCCAAAAAACTTAATGTACCCTTCCCTTTTCTTTGGAGCTAGAGGAGTATTTG
CCTCACTGAACCTTTTTCTGTAGATGTTTCTAAATTTGGGGATCAGAGGATGGGGATGGT
CTGGTAACCTAGAGGTTGGAGGTCACAGGCTGAGCCTAGAGATTTTATCATCTGGATTCA
GTGCCTTTCTCTAGGACTCGATCAAAAACTAAAACAATGGTGCTAGTGGGGCAGGGGCCA
CGTGAGTTCTGCCCCTTCAGCCCTTGGAGGTTGATTTTGGACTTTAGCTTTTGAAAATGC
AGACTGAATAAACTTTGACTTGCTGTGTCTTTAACAGCAGCAGATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCACGGCTCAAACGCAGGCCGACACCGAGGTACTTAGCAAGGCCAGGCTCTCCCACGAC
TGCAGGGCCCCTCCGCCAGCCCGCCCTGGGGCATGCACAGCAGGTGGTCATCCGAGCACA
CCAGGAACAGCTGCATGAAATGGCCAAGCTGGGCTTCAAGGAGGAGACCCTGATGAGCCA
GCTGGCTCCTAATGATTTTGAAGATTTTGTGACCCAGTTGGATGAAATCATGGCTTTGAA
GTCCAAGTGCATCCAGAGTCTGAGGAGCCAGTTGCAGCTATACCTGGCCTGCCACAGGCC
TGCCACAGCCCCTGAGAGGACAGCGGTATCTTAAAGCAAAACCCAGTATGGGGTGGCTAG
GCTCCTGAGGGCTGAGGGCCTCTGCCAGGTCCCCCTGCAGATATACTAGAACCCACTACC
TAGTCCTGCCCATTCTGGCCTCTCCCGAGCCACACACAGCCTTGGCTGGGCCCAGCTCCT
TTCTTGGGGCCAGGTATATGCCCCTCAGTTCTAAGCACAGGAGCATCTATAAGGAAGGAC
AGATCAGCCCAAAAAACTTAATGTACCCTTCCCTTTTCTTTGGAGCTAGAGGAGTATTTG
CCTCACTGAACCTTTTTCTGTAGATGTTTCTAAATTTGGGGATCAGAGGATGGGGATGGT
CTGGTAACCTAGAGGTTGGAGGTCACAGGCTGAGCCTAGAGATTTTATCATCTGGATTCA
GTGCCTTTCTCTAGGACTCGATCAAAAACTAAAACAATGGTGCTAGTGGGGCAGGGGCCA
CGTGAGTTCTGCCCCTTCAGCCCTTGGAGGTTGATTTTGGACTTTAGCTTTTGAAAATGC
AGACTGAATAAACTTTGACTTGCTGTGTCTTTAACAGCAGCAGATATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61876681|ref|XP_610298.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61876681|ref|XP_610298.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               277-430, - strand, RNAz p=0.977341
               

               
               371-478, - strand, RNAz p=0.71389

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-430, - strand, RNAz p=0.977341
               

               
               371-478, - strand, RNAz p=0.71389

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               189-615, gnl|bosTau2|chr8 (41060479-41060059)
               

               
               189-615, gnl|canFam2|chr11 (54006753-54007244)
               

               
               189-615, gnl|dasNov1|scaffold_19785 (20653-21176)
               

               
               189-615, gnl|hg17|chr9 (34243785-34244340)
               

               
               189-615, gnl|Hg17|chr9 (34244523-34244088)
               

               
               189-615, gnl|loxAfr1|scaffold_77982 (5790-5212)
               

               
               189-615, gnl|mm7|chr4 (41530064-41530555)
               

               
               189-615, gnl|Mm7|chr4 (41530720-41530311)
               

               
               189-615, gnl|panTro1|chr11 (34778345-34778899)
               

               
               189-615, gnl|rheMac2|chr15 (43252673-43252135)
               

               
               189-615, gnl|rn3|chr5 (58821588-58822050)
               


               
               678-885, gnl|bosTau2|chr8 (41059944-41059748)
               

               
               678-885, gnl|Hg17|chr9 (34243981-34243763)
               

               
               678-885, gnl|Mm7|chr4 (41530213-41529855)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               189-615, gnl|bosTau2|chr8 (41060479-41060059)
               

               
               189-615, gnl|canFam2|chr11 (54006753-54007244)
               

               
               189-615, gnl|dasNov1|scaffold_19785 (20653-21176)
               

               
               189-615, gnl|hg17|chr9 (34243785-34244340)
               

               
               189-615, gnl|Hg17|chr9 (34244523-34244088)
               

               
               189-615, gnl|loxAfr1|scaffold_77982 (5790-5212)
               

               
               189-615, gnl|mm7|chr4 (41530064-41530555)
               

               
               189-615, gnl|Mm7|chr4 (41530720-41530311)
               

               
               189-615, gnl|panTro1|chr11 (34778345-34778899)
               

               
               189-615, gnl|rheMac2|chr15 (43252673-43252135)
               

               
               189-615, gnl|rn3|chr5 (58821588-58822050)
               


               
               678-885, gnl|bosTau2|chr8 (41059944-41059748)
               

               
               678-885, gnl|Hg17|chr9 (34243981-34243763)
               

               
               678-885, gnl|Mm7|chr4 (41530213-41529855)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	277-430, - strand, RNAz p=0.977341
	371-478, - strand, RNAz p=0.71389

	189-615, gnl\|bosTau2\|chr8 (41060479-41060059)
	189-615, gnl\|canFam2\|chr11 (54006753-54007244)
	189-615, gnl\|dasNov1\|scaffold_19785 (20653-21176)
	189-615, gnl\|hg17\|chr9 (34243785-34244340)
	189-615, gnl\|Hg17\|chr9 (34244523-34244088)
	189-615, gnl\|loxAfr1\|scaffold_77982 (5790-5212)
	189-615, gnl\|mm7\|chr4 (41530064-41530555)
	189-615, gnl\|Mm7\|chr4 (41530720-41530311)
	189-615, gnl\|panTro1\|chr11 (34778345-34778899)
	189-615, gnl\|rheMac2\|chr15 (43252673-43252135)
	189-615, gnl\|rn3\|chr5 (58821588-58822050)

	678-885, gnl\|bosTau2\|chr8 (41059944-41059748)
	678-885, gnl\|Hg17\|chr9 (34243981-34243763)
	678-885, gnl\|Mm7\|chr4 (41530213-41529855)