Ss1.1-reep04c_g14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGATGGCGGCCTCCATGTGCGACGTGTTCTCTTTCTGCGTGGGCGTGCCGGGCCGGGCT GGGGTCCCTGTGGAAGTCCGCTTTGTGAACAGCGCCAAGGGAAAGGGGCTCTTTGCCACA CAGCTGATCCGGAAGGGGGAGACCATATTTGTAGAACAGCCCCTGGTGGCTGCGCAGTTT CTCTGGAATGCACTTTATCGTTACCGAGCTTGTGACCACTGCCTTCGGGCCCTGGAGAAG GCAGAGGAGAATGCCCAGAGGCTGACGGGGAAACCAGGCCAGGTTCTGCCCCACCCTGAC CTGTGCACTGTGCGCAAGGACCTCCACCAGAACTGTCCCCACTGCCAGGTGATGTACTGC AGTGCAGAATGTCGACTGGCCGCTGCCGAGCAGTACCATCAGGTCTTGTGCCCAGGCCCC TCCCAGGATGACCCCCTGCATCCTCTCAATAAGCTGCAGGAAGCATGGAGGAGTGTTCAT TACCCCCCTGAGACTGCAAGCATCATGTTGATGGCCCGGATGGTGGCCACAGTGAAGCAG GCTAAAGATAAGGATCGTTGGATCAGGCTCTACTCCCAGTTCTGTAATAAAACAGCCAAT GAGGAGGAGGAAATTGTCCACAAACTCCTGGGGGACAATTTCAACGGCCAGCTGGAGCTT CTGCGGAGACTCTTCACAGAGGCGCTCTATGAGGAAGCACTCAGCCAGTGGTTCACTCCA AATGGATTCCGGACTCTCTTTGCTCTTGTTGGGACCAATGGCCAAGGAATTGGAACCAGC TCCCTGAGCCAGTGGGTCCACGCCTGTGACTCTCTGGAGCTGAACCCTCATGACCGTGAG CAGCTGGACACCTTCATGAATCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGATGGCGGCCTCCATGTGCGACGTGTTCTCTTTCTGCGTGGGCGTGCCGGGCCGGGCT GGGGTCCCTGTGGAAGTCCGCTTTGTGAACAGCGCCAAGGGAAAGGGGCTCTTTGCCACA CAGCTGATCCGGAAGGGGGAGACCATATTTGTAGAACAGCCCCTGGTGGCTGCGCAGTTT CTCTGGAATGCACTTTATCGTTACCGAGCTTGTGACCACTGCCTTCGGGCCCTGGAGAAG GCAGAGGAGAATGCCCAGAGGCTGACGGGGAAACCAGGCCAGGTTCTGCCCCACCCTGAC CTGTGCACTGTGCGCAAGGACCTCCACCAGAACTGTCCCCACTGCCAGGTGATGTACTGC AGTGCAGAATGTCGACTGGCCGCTGCCGAGCAGTACCATCAGGTCTTGTGCCCAGGCCCC TCCCAGGATGACCCCCTGCATCCTCTCAATAAGCTGCAGGAAGCATGGAGGAGTGTTCAT TACCCCCCTGAGACTGCAAGCATCATGTTGATGGCCCGGATGGTGGCCACAGTGAAGCAG GCTAAAGATAAGGATCGTTGGATCAGGCTCTACTCCCAGTTCTGTAATAAAACAGCCAAT GAGGAGGAGGAAATTGTCCACAAACTCCTGGGGGACAATTTCAACGGCCAGCTGGAGCTT CTGCGGAGACTCTTCACAGAGGCGCTCTATGAGGAAGCACTCAGCCAGTGGTTCACTCCA AATGGATTCCGGACTCTCTTTGCTCTTGTTGGGACCAATGGCCAAGGAATTGGAACCAGC TCCCTGAGCCAGTGGGTCCACGCCTGTGACTCTCTGGAGCTGAACCCTCATGACCGTGAG CAGCTGGACACCTTCATGAATCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 204-303, - strand, RNAz p=0.635544 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 204-303, - strand, RNAz p=0.635544 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 204-352, gnl|bosTau2|chr11 (8912193-8912341) | |
| 204-352, gnl|canFam2|chr17 (52718928-52718744) | |
| 204-352, gnl|danRer3|chr23 (9843685-9843848) | |
| 204-352, gnl|echTel1|scaffold_250502 (5773-5604) | |
| 204-352, gnl|fr1|chrUn (167320924-167320763) | |
| 204-352, gnl|galGal2|chr4 (89761430-89761254) | |
| 204-352, gnl|hg17|chr2 (73358814-73358998) | |
| 204-352, gnl|Hg17|chr2 (73358829-73358977) | |
| 204-352, gnl|mm7|chr6 (85468377-85468559) | |
| 204-352, gnl|Mm7|chr6 (85468390-85468538) | |
| 204-352, gnl|oryCun1|scaffold_193007 (6904-7087) | |
| 204-352, gnl|panTro1|chr12 (75767472-75767656) | |
| 204-352, gnl|rheMac2|chr13 (73524107-73524291) | |
| 204-352, gnl|rn3|chr4 (119937596-119937778) | |
| 204-352, gnl|tetNig1|chr1 (5185528-5185381) | |
| 204-352, gnl|xenTro1|scaffold_778 (134278-134444) | |
| 538-644, gnl|bosTau2|chr11 (8913969-8914075) | |
| 538-644, gnl|canFam2|chr17 (52717120-52717006) | |
| 538-644, gnl|danRer3|chr23 (9850201-9850315) | |
| 538-644, gnl|echTel1|scaffold_250502 (4034-3912) | |
| 538-644, gnl|fr1|chrUn (167319756-167319644) | |
| 538-644, gnl|galGal2|chr4 (89759720-89759608) | |
| 538-644, gnl|hg17|chr2 (73360604-73360718) | |
| 538-644, gnl|Hg17|chr2 (73360606-73360712) | |
| 538-644, gnl|loxAfr1|scaffold_13741 (34076-33962) | |
| 538-644, gnl|mm7|chr6 (85470278-85470394) | |
| 538-644, gnl|Mm7|chr6 (85470283-85470388) | |
| 538-644, gnl|oryCun1|scaffold_193007 (10240-10354) | |
| 538-644, gnl|panTro1|chr12 (75769228-75769342) | |
| 538-644, gnl|rheMac2|chr13 (73525883-73525997) | |
| 538-644, gnl|rn3|chr4 (119939502-119939618) | |
| 538-644, gnl|tetNig1|chr1 (5184594-5184483) | |
| 538-644, gnl|xenTro1|scaffold_778 (135780-135892) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 204-352, gnl|bosTau2|chr11 (8912193-8912341) | |
| 204-352, gnl|canFam2|chr17 (52718928-52718744) | |
| 204-352, gnl|danRer3|chr23 (9843685-9843848) | |
| 204-352, gnl|echTel1|scaffold_250502 (5773-5604) | |
| 204-352, gnl|fr1|chrUn (167320924-167320763) | |
| 204-352, gnl|galGal2|chr4 (89761430-89761254) | |
| 204-352, gnl|hg17|chr2 (73358814-73358998) | |
| 204-352, gnl|Hg17|chr2 (73358829-73358977) | |
| 204-352, gnl|mm7|chr6 (85468377-85468559) | |
| 204-352, gnl|Mm7|chr6 (85468390-85468538) | |
| 204-352, gnl|oryCun1|scaffold_193007 (6904-7087) | |
| 204-352, gnl|panTro1|chr12 (75767472-75767656) | |
| 204-352, gnl|rheMac2|chr13 (73524107-73524291) | |
| 204-352, gnl|rn3|chr4 (119937596-119937778) | |
| 204-352, gnl|tetNig1|chr1 (5185528-5185381) | |
| 204-352, gnl|xenTro1|scaffold_778 (134278-134444) | |
| 538-644, gnl|bosTau2|chr11 (8913969-8914075) | |
| 538-644, gnl|canFam2|chr17 (52717120-52717006) | |
| 538-644, gnl|danRer3|chr23 (9850201-9850315) | |
| 538-644, gnl|echTel1|scaffold_250502 (4034-3912) | |
| 538-644, gnl|fr1|chrUn (167319756-167319644) | |
| 538-644, gnl|galGal2|chr4 (89759720-89759608) | |
| 538-644, gnl|hg17|chr2 (73360604-73360718) | |
| 538-644, gnl|Hg17|chr2 (73360606-73360712) | |
| 538-644, gnl|loxAfr1|scaffold_13741 (34076-33962) | |
| 538-644, gnl|mm7|chr6 (85470278-85470394) | |
| 538-644, gnl|Mm7|chr6 (85470283-85470388) | |
| 538-644, gnl|oryCun1|scaffold_193007 (10240-10354) | |
| 538-644, gnl|panTro1|chr12 (75769228-75769342) | |
| 538-644, gnl|rheMac2|chr13 (73525883-73525997) | |
| 538-644, gnl|rn3|chr4 (119939502-119939618) | |
| 538-644, gnl|tetNig1|chr1 (5184594-5184483) | |
| 538-644, gnl|xenTro1|scaffold_778 (135780-135892) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |