Non-Coding RNA Search

Ss1.1-reep04c_g21.5

Sequence:


               
               GCGTGGTCGCGGCCGAGGTGCCCTGAAGACTCGGCTACTGCCTTCTGTGGGAATTTCGCT
TCATACAGAGGACAAGTTTGTGCTTTGGTTTCCAGTGTTTTACTTTGGAGTTTAGGTGCC
ATATCCTGAGTTTTTTTTTTTTTTTTTTCCTTTATTTAAAGTCTGCTGTGTTTGTAACCA
GTGTGTGTTGAGAAGGACCAACATCATACTGCCCTGGGGGAGGACAGGGGATGGACAAAC
ATTAAAAAAGAACAGCAGAATTTTCCCCCAACTACCCCAAGAGAGAGGACTGAGTGAAAC
GAAAAACTGGCCCCCAGAATCTTGAGTGCGAGAGTGGGTGAAAGGATGACTGACATCCAG
GGGCTTTGGGGTGGGGAGAAGGTGGGGTTGGCTTTGGAGAGTGAGAGTGACTTGACACCC
AAGGGCCTTGGGGGCTGGTGGCTAAAACTCCTCCATGGCTGCCTTCTGTGGAAATACCGA
GTTCTTGCCACCTATTTTTTAGATTCTTATCTAGGGTTTCTGCCCCTTTTTTCCTAAATA
GGGGCTAACAATTCTCTGGAAATAAAGCACCTGTTAAATTAGCCTGACATATGCAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTGGTCGCGGCCGAGGTGCCCTGAAGACTCGGCTACTGCCTTCTGTGGGAATTTCGCT
TCATACAGAGGACAAGTTTGTGCTTTGGTTTCCAGTGTTTTACTTTGGAGTTTAGGTGCC
ATATCCTGAGTTTTTTTTTTTTTTTTTTCCTTTATTTAAAGTCTGCTGTGTTTGTAACCA
GTGTGTGTTGAGAAGGACCAACATCATACTGCCCTGGGGGAGGACAGGGGATGGACAAAC
ATTAAAAAAGAACAGCAGAATTTTCCCCCAACTACCCCAAGAGAGAGGACTGAGTGAAAC
GAAAAACTGGCCCCCAGAATCTTGAGTGCGAGAGTGGGTGAAAGGATGACTGACATCCAG
GGGCTTTGGGGTGGGGAGAAGGTGGGGTTGGCTTTGGAGAGTGAGAGTGACTTGACACCC
AAGGGCCTTGGGGGCTGGTGGCTAAAACTCCTCCATGGCTGCCTTCTGTGGAAATACCGA
GTTCTTGCCACCTATTTTTTAGATTCTTATCTAGGGTTTCTGCCCCTTTTTTCCTAAATA
GGGGCTAACAATTCTCTGGAAATAAAGCACCTGTTAAATTAGCCTGACATATGCAAAAAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               19-353, - strand, RNAz p=0.935621
               

               
               483-600, + strand, RNAz p=0.966068

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               19-353, - strand, RNAz p=0.935621
               

               
               483-600, + strand, RNAz p=0.966068

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               273-400, - strand, RNAmicro p=0.979089

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               273-400, - strand, RNAmicro p=0.979089

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of BC036782, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC036782, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               19-600, gnl|bosTau2|chr15 (48853446-48854037)
               

               
               19-600, gnl|Hg17|chr11 (47450222-47449648)
               

               
               19-600, gnl|Mm7|chr2 (90864215-90864760)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-600, gnl|bosTau2|chr15 (48853446-48854037)
               

               
               19-600, gnl|Hg17|chr11 (47450222-47449648)
               

               
               19-600, gnl|Mm7|chr2 (90864215-90864760)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	19-353, - strand, RNAz p=0.935621
	483-600, + strand, RNAz p=0.966068

	19-600, gnl\|bosTau2\|chr15 (48853446-48854037)
	19-600, gnl\|Hg17\|chr11 (47450222-47449648)
	19-600, gnl\|Mm7\|chr2 (90864215-90864760)