Ss1.1-reep04c_j16.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAAGACGTCTGTGTGTTCAAGTGCTCAGTGTCCCGGGAGACAGAGTGTAGCCGTGTGGG CAAGCAGTCCTTCATCATCACCCTCGGCTGCAACAGCGTCCTCATCCAGTTTGCCACACC CAGCGATTTCTGTTCCTTCTATAACATCCTGAAAACCTGCCGGGGCCACACCCTGGAGCG GTCCGTGTTCAGCGAGCGCACGGAGGAGTCCTCTGCTGTGCAGTATTTCCAGTTTTATGG CTACCTGTCCCAGCAGCAGAACATGATGCAGGACTACGTGCGGACGGGCACCTACCAGCG CGCCATCCTACAGAACCACACGGACTTCAAGGACAAGATCGTTTTAGACGTTGGCTGTGG CTCTGGGATCCTGTCATTTTTTGCTGCCCAAGCTGGAGCGAGGAAGATCTACGCGGTGGA GGCCAGCACCATGGCCCAGCATGCCGAGGTCCTGGTGAAGAGTAACAACCTCACCGACCG CATTGTGGTCATCCCCGGGAAGGTGGAGGAGGTGTCCCTCCCCGAGCAGGTGGACATCAT CATCTCTGAGCCCATGGGCTACATGCTCTTCAATGAACGCATGCTCGAGAGCTACCTCCA CGCCAAGAAGTACCTGAGGCCTGGTGGAAACATGTTTCCCACCATTGGCGATGTCCACCT CGCACCCTTCACTGACGAACAGCTCTACATGGAGCAGTTCACCAAGGCCAACTTCTGGTA CCAGCCATCCTTTCATGGAGTGGACCTGTCAGCCCTCCGAGGCGCCGCGGTGGACGAGTA TTTCCGGCAGCCTGTGGTGGACACATTTGACATCCGGATCCTTATGGCCAAGTCTGTCAA GTACACGGTGAACTTCTTAGAAGCCAAAGAAGGAGATTTGCACAGGATAGAAATCCCATT CAAATTCCACATGCTGCATTCCGGGCTGGTTCACGGTCTGGCTTTCTGGTTTGACGTCGC TTTCATTGGCTCCATAATGACCGTGTGGTTGTCCACGGCGCCGACGGAACCCCTGACCCA CTGGTACCAGGTCCGGTGCCTGTTCCAGTCACCACTGTTTGCCAAGGCTGGGGACACGCT CTCAGGGACATGTCTGCTTATTGCCAACAAAAGACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAAGACGTCTGTGTGTTCAAGTGCTCAGTGTCCCGGGAGACAGAGTGTAGCCGTGTGGG CAAGCAGTCCTTCATCATCACCCTCGGCTGCAACAGCGTCCTCATCCAGTTTGCCACACC CAGCGATTTCTGTTCCTTCTATAACATCCTGAAAACCTGCCGGGGCCACACCCTGGAGCG GTCCGTGTTCAGCGAGCGCACGGAGGAGTCCTCTGCTGTGCAGTATTTCCAGTTTTATGG CTACCTGTCCCAGCAGCAGAACATGATGCAGGACTACGTGCGGACGGGCACCTACCAGCG CGCCATCCTACAGAACCACACGGACTTCAAGGACAAGATCGTTTTAGACGTTGGCTGTGG CTCTGGGATCCTGTCATTTTTTGCTGCCCAAGCTGGAGCGAGGAAGATCTACGCGGTGGA GGCCAGCACCATGGCCCAGCATGCCGAGGTCCTGGTGAAGAGTAACAACCTCACCGACCG CATTGTGGTCATCCCCGGGAAGGTGGAGGAGGTGTCCCTCCCCGAGCAGGTGGACATCAT CATCTCTGAGCCCATGGGCTACATGCTCTTCAATGAACGCATGCTCGAGAGCTACCTCCA CGCCAAGAAGTACCTGAGGCCTGGTGGAAACATGTTTCCCACCATTGGCGATGTCCACCT CGCACCCTTCACTGACGAACAGCTCTACATGGAGCAGTTCACCAAGGCCAACTTCTGGTA CCAGCCATCCTTTCATGGAGTGGACCTGTCAGCCCTCCGAGGCGCCGCGGTGGACGAGTA TTTCCGGCAGCCTGTGGTGGACACATTTGACATCCGGATCCTTATGGCCAAGTCTGTCAA GTACACGGTGAACTTCTTAGAAGCCAAAGAAGGAGATTTGCACAGGATAGAAATCCCATT CAAATTCCACATGCTGCATTCCGGGCTGGTTCACGGTCTGGCTTTCTGGTTTGACGTCGC TTTCATTGGCTCCATAATGACCGTGTGGTTGTCCACGGCGCCGACGGAACCCCTGACCCA CTGGTACCAGGTCCGGTGCCTGTTCCAGTCACCACTGTTTGCCAAGGCTGGGGACACGCT CTCAGGGACATGTCTGCTTATTGCCAACAAAAGACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 486-605, - strand, RNAz p=0.75843 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 486-605, - strand, RNAz p=0.75843 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-140, gnl|bosTau2|chr7 (10009669-10009808) | |
| 1-140, gnl|canFam2|chr20 (53351083-53350947) | |
| 1-140, gnl|danRer3|chr3 (31492857-31492730) | |
| 1-140, gnl|dasNov1|scaffold_15088 (1074-1186) | |
| 1-140, gnl|echTel1|scaffold_291235 (53801-53920) | |
| 1-140, gnl|fr1|chrUn (265535161-265535022) | |
| 1-140, gnl|hg17|chr19 (10876629-10876768) | |
| 1-140, gnl|Hg17|chr19 (10876628-10876767) | |
| 1-140, gnl|loxAfr1|scaffold_31057 (17670-17543) | |
| 1-140, gnl|mm7|chr9 (21447160-21447291) | |
| 1-140, gnl|Mm7|chr9 (21447159-21447295) | |
| 1-140, gnl|monDom2|scaffold_106 (2803045-2803183) | |
| 1-140, gnl|oryCun1|scaffold_114300 (5507-5645) | |
| 1-140, gnl|panTro1|chr20_random (512233-512372) | |
| 1-140, gnl|rheMac2|chr19 (10720055-10720194) | |
| 1-140, gnl|rn3|chr8 (20673424-20673562) | |
| 1-140, gnl|tetNig1|chrUn_random (37670390-37670252) | |
| 1-140, gnl|xenTro1|scaffold_1142 (146298-146167) | |
| 227-337, gnl|bosTau2|chr7 (10012723-10012833) | |
| 227-337, gnl|Hg17|chr19 (10880773-10880883) | |
| 227-337, gnl|Mm7|chr9 (21453112-21453222) | |
| 447-627, gnl|bosTau2|chr7 (10016410-10016590) | |
| 447-627, gnl|Hg17|chr19 (10885551-10885731) | |
| 447-627, gnl|Mm7|chr9 (21458014-21458194) | |
| 973-1113, gnl|bosTau2|chr7 (10023971-10024111) | |
| 973-1113, gnl|canFam2|chr20 (53337298-53337208) | |
| 973-1113, gnl|danRer3|chr3 (31484898-31484808) | |
| 973-1113, gnl|dasNov1|scaffold_15088 (2004-2088) | |
| 973-1113, gnl|echTel1|scaffold_196908 (2450-2360) | |
| 973-1113, gnl|fr1|chrUn (137341913-137342003) | |
| 973-1113, gnl|hg17|chr19 (10892107-10892197) | |
| 973-1113, gnl|Hg17|chr19 (10892109-10892249) | |
| 973-1113, gnl|loxAfr1|scaffold_19057 (35353-35445) | |
| 973-1113, gnl|mm7|chr9 (21464592-21464682) | |
| 973-1113, gnl|Mm7|chr9 (21464594-21464734) | |
| 973-1113, gnl|monDom2|scaffold_106 (2824098-2824188) | |
| 973-1113, gnl|oryCun1|scaffold_175274 (2221-2131) | |
| 973-1113, gnl|rheMac2|chr19 (10735847-10735937) | |
| 973-1113, gnl|rn3|chr8 (20692555-20692645) | |
| 973-1113, gnl|tetNig1|chrUn_random (37665578-37665488) | |
| 973-1113, gnl|xenTro1|scaffold_1142 (142762-142672) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-140, gnl|bosTau2|chr7 (10009669-10009808) | |
| 1-140, gnl|canFam2|chr20 (53351083-53350947) | |
| 1-140, gnl|danRer3|chr3 (31492857-31492730) | |
| 1-140, gnl|dasNov1|scaffold_15088 (1074-1186) | |
| 1-140, gnl|echTel1|scaffold_291235 (53801-53920) | |
| 1-140, gnl|fr1|chrUn (265535161-265535022) | |
| 1-140, gnl|hg17|chr19 (10876629-10876768) | |
| 1-140, gnl|Hg17|chr19 (10876628-10876767) | |
| 1-140, gnl|loxAfr1|scaffold_31057 (17670-17543) | |
| 1-140, gnl|mm7|chr9 (21447160-21447291) | |
| 1-140, gnl|Mm7|chr9 (21447159-21447295) | |
| 1-140, gnl|monDom2|scaffold_106 (2803045-2803183) | |
| 1-140, gnl|oryCun1|scaffold_114300 (5507-5645) | |
| 1-140, gnl|panTro1|chr20_random (512233-512372) | |
| 1-140, gnl|rheMac2|chr19 (10720055-10720194) | |
| 1-140, gnl|rn3|chr8 (20673424-20673562) | |
| 1-140, gnl|tetNig1|chrUn_random (37670390-37670252) | |
| 1-140, gnl|xenTro1|scaffold_1142 (146298-146167) | |
| 227-337, gnl|bosTau2|chr7 (10012723-10012833) | |
| 227-337, gnl|Hg17|chr19 (10880773-10880883) | |
| 227-337, gnl|Mm7|chr9 (21453112-21453222) | |
| 447-627, gnl|bosTau2|chr7 (10016410-10016590) | |
| 447-627, gnl|Hg17|chr19 (10885551-10885731) | |
| 447-627, gnl|Mm7|chr9 (21458014-21458194) | |
| 973-1113, gnl|bosTau2|chr7 (10023971-10024111) | |
| 973-1113, gnl|canFam2|chr20 (53337298-53337208) | |
| 973-1113, gnl|danRer3|chr3 (31484898-31484808) | |
| 973-1113, gnl|dasNov1|scaffold_15088 (2004-2088) | |
| 973-1113, gnl|echTel1|scaffold_196908 (2450-2360) | |
| 973-1113, gnl|fr1|chrUn (137341913-137342003) | |
| 973-1113, gnl|hg17|chr19 (10892107-10892197) | |
| 973-1113, gnl|Hg17|chr19 (10892109-10892249) | |
| 973-1113, gnl|loxAfr1|scaffold_19057 (35353-35445) | |
| 973-1113, gnl|mm7|chr9 (21464592-21464682) | |
| 973-1113, gnl|Mm7|chr9 (21464594-21464734) | |
| 973-1113, gnl|monDom2|scaffold_106 (2824098-2824188) | |
| 973-1113, gnl|oryCun1|scaffold_175274 (2221-2131) | |
| 973-1113, gnl|rheMac2|chr19 (10735847-10735937) | |
| 973-1113, gnl|rn3|chr8 (20692555-20692645) | |
| 973-1113, gnl|tetNig1|chrUn_random (37665578-37665488) | |
| 973-1113, gnl|xenTro1|scaffold_1142 (142762-142672) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.245128) |