Non-Coding RNA Search

Ss1.1-reep04c_k14.5

Sequence:


               
               TTTAGAGAAATTCTGGAAAGATTTCAAAGCCCCTTAAGTTTCGTGCATGTGGGAATAGAG
CAACAGCTCTTAAAATGACACCATGTAGAATTTGCATGCTGCACAAGCTGTTTTTTTAAA
CATGTTAAAATATAAACCATGGTAATAAATGAGTAGGACACTGAAGATTTTATATCCTAA
AACCAAATACTCTCACAGGTGTGATCAGTTTTAAACATCTGCCAGAGGGTTCGGCCTCCT
TTGAAATAACATTCCACAGTAGAGATGATGGCATTTTGACTCTTCATTCTTTCTCTTTTC
TGCTTCGCAATTTCTCATCTCCGCCCCCACCTCCACCACTCTTCTTTTCAAACAGATTTC
AGAATCCGCTTCGTTACTTTTCATCTGTTTGCCCTTTTCTGCAGTCTGCCCTGAAAGCCC
CTTGTTGATTCCGTTTGCAGAGAAATGTAGTTAAACCCCATTGGGGCGGGGGTCCCTCAC
AAACTCCCAGGCCCCTCCCAAGGTTCAGGATGGAAAGCTGGAAATCACAAGAGTAAAAAT
TAGAAAGGAACCAAAACCTTCAAAGCTAATAGCCTAGGCCTAGAAGATGACCTTGACCTT
ATAGCCATTGTATTCATTACAAAGAATAGGTAAACTCTCATGAGCATATAATACCTGTTT
CTGCTTCCATTTTTTCAAGCTCATCTTGTCTTTGTGGTTGTAGTATTTGTCTTTCATATC
TACAAACTGAAAAGGTACTTGTAGCAACGAGGTTTCTCCAAAACATTTACCAAACCAGCT
TTGAGGAAATCTAGAATGTTTCCTGACAACAGCATTTGGAGTAGTAATTGTATTTTCTCA
TTGTGATGTTGGTCTGTGTACGTAACCAATGTAGTGACTCTTTGTTCATTACTGGTGATG
TTTTTATTTGTAGTCTCTGTGTGACCTTCCAGTAGCCAGGGGTTCAAATCCCCTCCCCTC
TCTTTTTTGCATCTGTCTGTTTGTAGAACTGTAAGATAAAATACAAGACACCCAGTTAAG
TTTGAATTTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAGAGAAATTCTGGAAAGATTTCAAAGCCCCTTAAGTTTCGTGCATGTGGGAATAGAG
CAACAGCTCTTAAAATGACACCATGTAGAATTTGCATGCTGCACAAGCTGTTTTTTTAAA
CATGTTAAAATATAAACCATGGTAATAAATGAGTAGGACACTGAAGATTTTATATCCTAA
AACCAAATACTCTCACAGGTGTGATCAGTTTTAAACATCTGCCAGAGGGTTCGGCCTCCT
TTGAAATAACATTCCACAGTAGAGATGATGGCATTTTGACTCTTCATTCTTTCTCTTTTC
TGCTTCGCAATTTCTCATCTCCGCCCCCACCTCCACCACTCTTCTTTTCAAACAGATTTC
AGAATCCGCTTCGTTACTTTTCATCTGTTTGCCCTTTTCTGCAGTCTGCCCTGAAAGCCC
CTTGTTGATTCCGTTTGCAGAGAAATGTAGTTAAACCCCATTGGGGCGGGGGTCCCTCAC
AAACTCCCAGGCCCCTCCCAAGGTTCAGGATGGAAAGCTGGAAATCACAAGAGTAAAAAT
TAGAAAGGAACCAAAACCTTCAAAGCTAATAGCCTAGGCCTAGAAGATGACCTTGACCTT
ATAGCCATTGTATTCATTACAAAGAATAGGTAAACTCTCATGAGCATATAATACCTGTTT
CTGCTTCCATTTTTTCAAGCTCATCTTGTCTTTGTGGTTGTAGTATTTGTCTTTCATATC
TACAAACTGAAAAGGTACTTGTAGCAACGAGGTTTCTCCAAAACATTTACCAAACCAGCT
TTGAGGAAATCTAGAATGTTTCCTGACAACAGCATTTGGAGTAGTAATTGTATTTTCTCA
TTGTGATGTTGGTCTGTGTACGTAACCAATGTAGTGACTCTTTGTTCATTACTGGTGATG
TTTTTATTTGTAGTCTCTGTGTGACCTTCCAGTAGCCAGGGGTTCAAATCCCCTCCCCTC
TCTTTTTTGCATCTGTCTGTTTGTAGAACTGTAAGATAAAATACAAGACACCCAGTTAAG
TTTGAATTTCAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               15-1031, gnl|bosTau2|chr27 (17711967-17712997)
               

               
               15-1031, gnl|Hg17|chr8 (9675818-9676862)
               

               
               15-1031, gnl|Mm7|chr8 (33589200-33588215)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-1031, gnl|bosTau2|chr27 (17711967-17712997)
               

               
               15-1031, gnl|Hg17|chr8 (9675818-9676862)
               

               
               15-1031, gnl|Mm7|chr8 (33589200-33588215)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fhi (0.339155)
               

               
               ute (0.265569)
               

               
               hyp (0.142837)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               ute (0.265569)
               

               
               hyp (0.142837)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)

	15-1031, gnl\|bosTau2\|chr27 (17711967-17712997)
	15-1031, gnl\|Hg17\|chr8 (9675818-9676862)
	15-1031, gnl\|Mm7\|chr8 (33589200-33588215)

	fhi (0.339155)
	ute (0.265569)
	hyp (0.142837)
	cbr (0.127975)
	eep (0.122564)