Ss1.1-reep04c_o10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCGAAGTACAAGCCCAGATTTGTCCATACCCGGCAGACACGTTCCTTGTCCGTCGAAT TTGAAGGCGAGATCTATGACATAAACCTGGAAGAAGAAGAACTTCAGGTGTTGCAACCAA GAAGCATCACCAAGCGTCACAGTGAAGGCCGCCAGGGGCCGGGAGGGCACCAGGCTGCCA GCGGTGGCGACGGGGACACCATGCTGGCCGACAGTGGCAATGCCGTGGGCCTACCCACCA CCGTCCGGGTGACGCACAAGTGCTTTATTCTTCCAAATGATACAATCCATTGTGAGAGAG AGCTTTATCAATCAGCCAGAGCCTGGAAGGACCACAAGGCATACATTGATAAGGAGATTG AAGCTTTGCAAGATAAAATTAAGAATTTAAGAGAGGTGAGAGGACATCTGAAGAGAAGGA AACCTGAGGAGTGTGGCTGCAGTAAACAGAGCTATTACAACAAAGAGAAAGGTGTAAAAA AGCAAGAGAAATTAAAGAGCCATCTTCACCCATTCAAAGAAGCTGCTCAGGAAGTAGACA GCAAACTGCAGCTTTTCAAGGAGACCCGCAGGAGGAAGAAAGAGAGGAAGGAGAAGAAAC GGCAGCGGAAGGGGGAGGAGTGCAGCCTGCCCGGCCTCACCTGCTTCACCCACGACAACA ACCACTGGCAGACGGCGCCGTTCTGGAACCTGGGCTCTTTCTGTGCGTGCACCAGTTCTA ACAATAACACCTACTGGTGTCTGCGGACAGTTAATGAGACGCATAATTTTCTTTTCTGCG AGTTTGCCACTGGCTTTCTGGAGTATTTTGATATGAATACAGATCCTTATCAGCTCACCA ACACTGTGCACACAGTAGAAAGGGGCGTTTTGAATCAGCTACACGTGCAACTGATGGAGC TCAGGAGCTGTCAAGGGTATAAGCAATGCAACCCCAGACCTAAGGGCCTTGAACTTGATC AGGAAATAAAGATGGAGGAAGCTATGACCTACACAGAGGACAGTTATGGGATGGATGGGA AGGTTAACCTGGCCCCTCTCACTGCAGACGTCAACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCGAAGTACAAGCCCAGATTTGTCCATACCCGGCAGACACGTTCCTTGTCCGTCGAAT TTGAAGGCGAGATCTATGACATAAACCTGGAAGAAGAAGAACTTCAGGTGTTGCAACCAA GAAGCATCACCAAGCGTCACAGTGAAGGCCGCCAGGGGCCGGGAGGGCACCAGGCTGCCA GCGGTGGCGACGGGGACACCATGCTGGCCGACAGTGGCAATGCCGTGGGCCTACCCACCA CCGTCCGGGTGACGCACAAGTGCTTTATTCTTCCAAATGATACAATCCATTGTGAGAGAG AGCTTTATCAATCAGCCAGAGCCTGGAAGGACCACAAGGCATACATTGATAAGGAGATTG AAGCTTTGCAAGATAAAATTAAGAATTTAAGAGAGGTGAGAGGACATCTGAAGAGAAGGA AACCTGAGGAGTGTGGCTGCAGTAAACAGAGCTATTACAACAAAGAGAAAGGTGTAAAAA AGCAAGAGAAATTAAAGAGCCATCTTCACCCATTCAAAGAAGCTGCTCAGGAAGTAGACA GCAAACTGCAGCTTTTCAAGGAGACCCGCAGGAGGAAGAAAGAGAGGAAGGAGAAGAAAC GGCAGCGGAAGGGGGAGGAGTGCAGCCTGCCCGGCCTCACCTGCTTCACCCACGACAACA ACCACTGGCAGACGGCGCCGTTCTGGAACCTGGGCTCTTTCTGTGCGTGCACCAGTTCTA ACAATAACACCTACTGGTGTCTGCGGACAGTTAATGAGACGCATAATTTTCTTTTCTGCG AGTTTGCCACTGGCTTTCTGGAGTATTTTGATATGAATACAGATCCTTATCAGCTCACCA ACACTGTGCACACAGTAGAAAGGGGCGTTTTGAATCAGCTACACGTGCAACTGATGGAGC TCAGGAGCTGTCAAGGGTATAAGCAATGCAACCCCAGACCTAAGGGCCTTGAACTTGATC AGGAAATAAAGATGGAGGAAGCTATGACCTACACAGAGGACAGTTATGGGATGGATGGGA AGGTTAACCTGGCCCCTCTCACTGCAGACGTCAACT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 123-242, - strand, RNAz p=0.88286 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 123-242, - strand, RNAz p=0.88286 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 7-261, gnl|bosTau2|chr14 (19527803-19527549) | |
| 7-261, gnl|Hg17|chr8 (70698731-70698988) | |
| 7-261, gnl|Mm7|chr1 (12983350-12983604) | |
| 518-701, gnl|bosTau2|chr14 (19522592-19522409) | |
| 518-701, gnl|Hg17|chr8 (70704293-70704479) | |
| 518-701, gnl|Mm7|chr1 (12987640-12987822) | |
| 831-970, gnl|bosTau2|chr14 (19520124-19519985) | |
| 831-970, gnl|canFam2|chr29 (21868641-21868788) | |
| 831-970, gnl|danRer3|chrNA (199113350-199113199) | |
| 831-970, gnl|dasNov1|scaffold_68986 (348-201) | |
| 831-970, gnl|echTel1|scaffold_325323 (7896-8037) | |
| 831-970, gnl|fr1|chrUn (133881263-133881406) | |
| 831-970, gnl|galGal2|chrUn (142306639-142306786) | |
| 831-970, gnl|hg17|chr8 (70713509-70713653) | |
| 831-970, gnl|Hg17|chr8 (70713521-70713660) | |
| 831-970, gnl|loxAfr1|scaffold_13531 (45004-44873) | |
| 831-970, gnl|mm7|chr1 (12993304-12993451) | |
| 831-970, gnl|Mm7|chr1 (12993319-12993450) | |
| 831-970, gnl|monDom2|scaffold_4 (91330095-91329940) | |
| 831-970, gnl|oryCun1|scaffold_203795 (129872-129725) | |
| 831-970, gnl|panTro1|chr7 (72744638-72744782) | |
| 831-970, gnl|rheMac2|chr10 (16802927-16803069) | |
| 831-970, gnl|rn3|chr5 (5594861-5594714) | |
| 831-970, gnl|tetNig1|chr11 (9108892-9109021) | |
| 831-970, gnl|xenTro1|scaffold_109 (1133361-1133507) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-261, gnl|bosTau2|chr14 (19527803-19527549) | |
| 7-261, gnl|Hg17|chr8 (70698731-70698988) | |
| 7-261, gnl|Mm7|chr1 (12983350-12983604) | |
| 518-701, gnl|bosTau2|chr14 (19522592-19522409) | |
| 518-701, gnl|Hg17|chr8 (70704293-70704479) | |
| 518-701, gnl|Mm7|chr1 (12987640-12987822) | |
| 831-970, gnl|bosTau2|chr14 (19520124-19519985) | |
| 831-970, gnl|canFam2|chr29 (21868641-21868788) | |
| 831-970, gnl|danRer3|chrNA (199113350-199113199) | |
| 831-970, gnl|dasNov1|scaffold_68986 (348-201) | |
| 831-970, gnl|echTel1|scaffold_325323 (7896-8037) | |
| 831-970, gnl|fr1|chrUn (133881263-133881406) | |
| 831-970, gnl|galGal2|chrUn (142306639-142306786) | |
| 831-970, gnl|hg17|chr8 (70713509-70713653) | |
| 831-970, gnl|Hg17|chr8 (70713521-70713660) | |
| 831-970, gnl|loxAfr1|scaffold_13531 (45004-44873) | |
| 831-970, gnl|mm7|chr1 (12993304-12993451) | |
| 831-970, gnl|Mm7|chr1 (12993319-12993450) | |
| 831-970, gnl|monDom2|scaffold_4 (91330095-91329940) | |
| 831-970, gnl|oryCun1|scaffold_203795 (129872-129725) | |
| 831-970, gnl|panTro1|chr7 (72744638-72744782) | |
| 831-970, gnl|rheMac2|chr10 (16802927-16803069) | |
| 831-970, gnl|rn3|chr5 (5594861-5594714) | |
| 831-970, gnl|tetNig1|chr11 (9108892-9109021) | |
| 831-970, gnl|xenTro1|scaffold_109 (1133361-1133507) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| eru (0.120048) | |
| jca (0.11396) |