Non-Coding RNA Search

Ss1.1-reep06c_m15.5

Sequence:


               
               CTCTAGGAGTCGTGTCACCGTGGTCCCGGACTCTGCCCACAAGCTGTTCATCGGAGGCCT
ACCCAACTACCTGAACGACGACCAGGTGAAAGAGCTGCTGACATCCTTCGGGCCTCTCAA
GGCCTTCAACCTGGTCAAGGACAGCGCCACGGGGCTCTCCAAGGGCTACGCCTTCTGTGA
GTACGTGGACATCAACGTCACGGATCAGGTGAGCCCTGGCCCCCACCCTGCCTCGCACCC
ACGCCAAGGTTGTCCCTCCCTGGGCTGGGCGGGGGGAGGCCAGCCTGCAGCAGGGCCTCG
CACGCGCGGGGGGCCCCTTCCCCTTGGTTCCAGCTCTCTCCAAGCTCTCAACCCTGTGCC
TTCCCCGTCCCCCACCAGGGCCCAGTGCTGGGCTGCGGGGGCTTGAGGGGAGGTGTCAGG
CTCTTGGCCTCTGACCTGTACTTTCCCCTGCGGCCCCCGACCCTCCTCCCCCCAACACAG
GCCATAGCGGGGCTGAACGGGATGCAGCTGGGGGATAAGAAACTGCTTGTCCAGAGGGCG
AGTGTGGGAGCCAAGAATGCCACGCTGAGCACCATCAACCAGACCCCGGTGACCCTGCAA
GTGCCTGGCCTGATGAGCTCCCAGGTGCAGATGGGCGGCCACCCGACCGAGGTCCTGTGT
CTCATGAACATGGTGCTGCCTGAGGAGCTGCTGGACGACGAGGAGTATGAGGAGATCGTG
GAGGACGTGCGCGACGAGTGCAGCAAGTACGGTCTCGTCAAGTCCATCGAGATCCCGCGG
CCTGTGGACGGCGTGGAGGTTCCCGGCTGCGGAAAGATCTTCGTGGAGTTCACCTCTGTG
TTTGATTGCCAGAAAGCCATGCAGGGCCTGACGGGTCGCAAGTTCGCCAACAGAGTGGTT
GTCACAAAGTACTGTGACCCCGACTCTTACCACCGCCGGGACTTCTGGTAGAGGCGGCGG
GGGAGGGCAGGGGCAGGGCTGGCTGGGGGCTTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTAGGAGTCGTGTCACCGTGGTCCCGGACTCTGCCCACAAGCTGTTCATCGGAGGCCT
ACCCAACTACCTGAACGACGACCAGGTGAAAGAGCTGCTGACATCCTTCGGGCCTCTCAA
GGCCTTCAACCTGGTCAAGGACAGCGCCACGGGGCTCTCCAAGGGCTACGCCTTCTGTGA
GTACGTGGACATCAACGTCACGGATCAGGTGAGCCCTGGCCCCCACCCTGCCTCGCACCC
ACGCCAAGGTTGTCCCTCCCTGGGCTGGGCGGGGGGAGGCCAGCCTGCAGCAGGGCCTCG
CACGCGCGGGGGGCCCCTTCCCCTTGGTTCCAGCTCTCTCCAAGCTCTCAACCCTGTGCC
TTCCCCGTCCCCCACCAGGGCCCAGTGCTGGGCTGCGGGGGCTTGAGGGGAGGTGTCAGG
CTCTTGGCCTCTGACCTGTACTTTCCCCTGCGGCCCCCGACCCTCCTCCCCCCAACACAG
GCCATAGCGGGGCTGAACGGGATGCAGCTGGGGGATAAGAAACTGCTTGTCCAGAGGGCG
AGTGTGGGAGCCAAGAATGCCACGCTGAGCACCATCAACCAGACCCCGGTGACCCTGCAA
GTGCCTGGCCTGATGAGCTCCCAGGTGCAGATGGGCGGCCACCCGACCGAGGTCCTGTGT
CTCATGAACATGGTGCTGCCTGAGGAGCTGCTGGACGACGAGGAGTATGAGGAGATCGTG
GAGGACGTGCGCGACGAGTGCAGCAAGTACGGTCTCGTCAAGTCCATCGAGATCCCGCGG
CCTGTGGACGGCGTGGAGGTTCCCGGCTGCGGAAAGATCTTCGTGGAGTTCACCTCTGTG
TTTGATTGCCAGAAAGCCATGCAGGGCCTGACGGGTCGCAAGTTCGCCAACAGAGTGGTT
GTCACAAAGTACTGTGACCCCGACTCTTACCACCGCCGGGACTTCTGGTAGAGGCGGCGG
GGGAGGGCAGGGGCAGGGCTGGCTGGGGGCTTCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5EB64_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5EB64_RAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               162-253, - strand, RNAz p=0.690293
               

               
               697-816, + strand, RNAz p=0.684645

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-253, - strand, RNAz p=0.690293
               

               
               697-816, + strand, RNAz p=0.684645

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               83-276, gnl|bosTau2|chr18 (52537878-52538064)
               

               
               83-276, gnl|Hg17|chr19 (60871845-60872100)
               

               
               83-276, gnl|Mm7|chr7 (4652612-4652877)
               


               
               567-816, gnl|bosTau2|chr18 (52538359-52538608)
               

               
               567-816, gnl|canFam2|chr1 (105154342-105154503)
               

               
               567-816, gnl|danRer3|chrUn (90302579-90302739)
               

               
               567-816, gnl|echTel1|scaffold_287337 (86818-86677)
               

               
               567-816, gnl|Hg17|chr19 (60872621-60872870)
               

               
               567-816, gnl|hg17|chr6 (81264734-81264901)
               

               
               567-816, gnl|loxAfr1|scaffold_79744 (3638-3799)
               

               
               567-816, gnl|mm7|chr7 (4653531-4653379)
               

               
               567-816, gnl|Mm7|chr7 (4653347-4653596)
               

               
               567-816, gnl|panTro1|chr5_random (47957028-47957194)
               

               
               567-816, gnl|rheMac2|chr4 (76575641-76575808)
               

               
               567-816, gnl|rn3|chr1 (67581974-67582126)
               

               
               567-816, gnl|tetNig1|chr8 (8270413-8270292)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-276, gnl|bosTau2|chr18 (52537878-52538064)
               

               
               83-276, gnl|Hg17|chr19 (60871845-60872100)
               

               
               83-276, gnl|Mm7|chr7 (4652612-4652877)
               


               
               567-816, gnl|bosTau2|chr18 (52538359-52538608)
               

               
               567-816, gnl|canFam2|chr1 (105154342-105154503)
               

               
               567-816, gnl|danRer3|chrUn (90302579-90302739)
               

               
               567-816, gnl|echTel1|scaffold_287337 (86818-86677)
               

               
               567-816, gnl|Hg17|chr19 (60872621-60872870)
               

               
               567-816, gnl|hg17|chr6 (81264734-81264901)
               

               
               567-816, gnl|loxAfr1|scaffold_79744 (3638-3799)
               

               
               567-816, gnl|mm7|chr7 (4653531-4653379)
               

               
               567-816, gnl|Mm7|chr7 (4653347-4653596)
               

               
               567-816, gnl|panTro1|chr5_random (47957028-47957194)
               

               
               567-816, gnl|rheMac2|chr4 (76575641-76575808)
               

               
               567-816, gnl|rn3|chr1 (67581974-67582126)
               

               
               567-816, gnl|tetNig1|chr8 (8270413-8270292)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	162-253, - strand, RNAz p=0.690293
	697-816, + strand, RNAz p=0.684645

	83-276, gnl\|bosTau2\|chr18 (52537878-52538064)
	83-276, gnl\|Hg17\|chr19 (60871845-60872100)
	83-276, gnl\|Mm7\|chr7 (4652612-4652877)

	567-816, gnl\|bosTau2\|chr18 (52538359-52538608)
	567-816, gnl\|canFam2\|chr1 (105154342-105154503)
	567-816, gnl\|danRer3\|chrUn (90302579-90302739)
	567-816, gnl\|echTel1\|scaffold_287337 (86818-86677)
	567-816, gnl\|Hg17\|chr19 (60872621-60872870)
	567-816, gnl\|hg17\|chr6 (81264734-81264901)
	567-816, gnl\|loxAfr1\|scaffold_79744 (3638-3799)
	567-816, gnl\|mm7\|chr7 (4653531-4653379)
	567-816, gnl\|Mm7\|chr7 (4653347-4653596)
	567-816, gnl\|panTro1\|chr5_random (47957028-47957194)
	567-816, gnl\|rheMac2\|chr4 (76575641-76575808)
	567-816, gnl\|rn3\|chr1 (67581974-67582126)
	567-816, gnl\|tetNig1\|chr8 (8270413-8270292)