Non-Coding RNA Search

Ss1.1-reep06c_o11.5

Sequence:


               
               GTTTGCATAAAGTGAAGTTTGACCATGTTGTGCTTGGCACAAGGTGAGATTTAACCGGAC
TGCTTCTGTAAAGCAAGGTTCTTCCATGATGACATTTGGTTCATCTGGACAGGGGGTGGT
GGCCCGTGCTAATGATGCCTCTATGCCCATGTCACTTCTTGCCCACAGATCTGGCGGGAG
CTCTTTTCCCCTCTGCATGCACTTAACTTTGGCATTGGTGGTGACAACACGCAGCATGTG
CTGTGGCGTCTGGAGAATGGGGAGCTGGAACACATCCGACCCAAGGTAAGCAGAGTTTGA
TTGGGCAGCTAGAGTACCCGTAGCCTGCTCCTCACCACTGCTTTATGCCTCTCTTTCCAC
AGATTGTGGTGGTCTGGGTGGGTACTAACAACCACGGGCACACTGCGGAGCAGGTGACTG
GCGGCATCAAGGCCATTGTGCATCTGGTGAACCAGCGGCAGCCCCAGGCCCGAGTCGTGG
TGCTGGTGAGAGAATGGGAGGGTGGGGAAGGAAGAGTTGCAGTGGTCTGGGACCCCTTCA
GGTAGGTGGCTGCACAGTTCTGGGCAGCTTGGCACAGAGTAGTGGCTTTCAGGCAGAATC
TCACATTGAAGCTTGTCACACCCATCAGAGCAGCTATGGTTAAGTACATGTTCAGGGACC
AATTAGCCTTTTTTGCCCAAGGGATTGCTAGAGATTCTGGAGGTGTTGAAAAGCTCTAGA
CACTTAAATAGCCAAAAGTTGTCAGTCATTCCCAGGGTGAATCTAGCCTCCATCACTTCA
GGAAAATTTTTGCTGAATGAGGGCTCAGATCGTAGTTTGGAAACTGTGTTTCCAAACCCG
CATCTTCCCATTCCTAGTGTGTTCTGCAGCTGGGGACTTCCTAGTAAGGGGTAGAGAACA
GACACAGGGAACAGGCTCCCCTGAAGGTGCTAGAATGCCTCCTCACAATCCCGGGTGTTT
TTCAGGGCCTGCTTCCTCGGGGTCAGCACCCCAATCCACTCCGTGAGAAAAACCGACGGG
TGAATGAACTGGTACGAGCGGCATTGGCTGGCCACCCACGGGCCCACTTTCTGGATGCAG
ACCCTGGCTTTGTGCACTCAGATGGAACCATAAGCCACCATGACATGTATGATTACCTGC
ATCTGAGCCGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGCATAAAGTGAAGTTTGACCATGTTGTGCTTGGCACAAGGTGAGATTTAACCGGAC
TGCTTCTGTAAAGCAAGGTTCTTCCATGATGACATTTGGTTCATCTGGACAGGGGGTGGT
GGCCCGTGCTAATGATGCCTCTATGCCCATGTCACTTCTTGCCCACAGATCTGGCGGGAG
CTCTTTTCCCCTCTGCATGCACTTAACTTTGGCATTGGTGGTGACAACACGCAGCATGTG
CTGTGGCGTCTGGAGAATGGGGAGCTGGAACACATCCGACCCAAGGTAAGCAGAGTTTGA
TTGGGCAGCTAGAGTACCCGTAGCCTGCTCCTCACCACTGCTTTATGCCTCTCTTTCCAC
AGATTGTGGTGGTCTGGGTGGGTACTAACAACCACGGGCACACTGCGGAGCAGGTGACTG
GCGGCATCAAGGCCATTGTGCATCTGGTGAACCAGCGGCAGCCCCAGGCCCGAGTCGTGG
TGCTGGTGAGAGAATGGGAGGGTGGGGAAGGAAGAGTTGCAGTGGTCTGGGACCCCTTCA
GGTAGGTGGCTGCACAGTTCTGGGCAGCTTGGCACAGAGTAGTGGCTTTCAGGCAGAATC
TCACATTGAAGCTTGTCACACCCATCAGAGCAGCTATGGTTAAGTACATGTTCAGGGACC
AATTAGCCTTTTTTGCCCAAGGGATTGCTAGAGATTCTGGAGGTGTTGAAAAGCTCTAGA
CACTTAAATAGCCAAAAGTTGTCAGTCATTCCCAGGGTGAATCTAGCCTCCATCACTTCA
GGAAAATTTTTGCTGAATGAGGGCTCAGATCGTAGTTTGGAAACTGTGTTTCCAAACCCG
CATCTTCCCATTCCTAGTGTGTTCTGCAGCTGGGGACTTCCTAGTAAGGGGTAGAGAACA
GACACAGGGAACAGGCTCCCCTGAAGGTGCTAGAATGCCTCCTCACAATCCCGGGTGTTT
TTCAGGGCCTGCTTCCTCGGGGTCAGCACCCCAATCCACTCCGTGAGAAAAACCGACGGG
TGAATGAACTGGTACGAGCGGCATTGGCTGGCCACCCACGGGCCCACTTTCTGGATGCAG
ACCCTGGCTTTGTGCACTCAGATGGAACCATAAGCCACCATGACATGTATGATTACCTGC
ATCTGAGCCGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26333225|dbj|BAC30330.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26333225|dbj|BAC30330.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               303-420, + strand, RNAz p=0.822246

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               303-420, + strand, RNAz p=0.822246

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-704, gnl|bosTau2|chr18 (45009484-45008776)
               

               
               1-704, gnl|Hg17|chr19 (47496463-47495739)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-704, gnl|bosTau2|chr18 (45009484-45008776)
               

               
               1-704, gnl|Hg17|chr19 (47496463-47495739)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eep (0.245128)
               

               
               pty (0.142714)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               pty (0.142714)
               

               
               ecc (0.115035)

	1-704, gnl\|bosTau2\|chr18 (45009484-45008776)
	1-704, gnl\|Hg17\|chr19 (47496463-47495739)