Non-Coding RNA Search

Ss1.1-reep09c_k22.5

Sequence:


               
               ACCACTGCCAAAGCCACCACCAAGACCACCCCCAAAGCCACCACCTCCAAAGCCACCGCC
CCCAAAGCCACCACCACCAAAAATACTGCCATAACCACTACCAAAACCACCACGTCCACC
TCCTCCGGCCACACTTATGGAGATGCTTTTACTGCCACCAAGGTTAACGAGACTCCGACT
TCCAAAACCACCACCAGCTCCCCCTCCACATACTCCACTAGTAAACCTCCCACCACCTCC
ACCACTGCGGCGAACGGAGCTGCTGGTCGACCTGCGCTGGTAGCTGACCAGCCCAGCAGA
GCCAGAGCTGAAGCCCCCTCTTCCTCCTCCTCCACAGCGGTACCCAGACCTGGAGCTAAA
GTGTCGACTCATGTTGACTTAGAGAGAGAAGGAGCAATGTCGAGAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCACTGCCAAAGCCACCACCAAGACCACCCCCAAAGCCACCACCTCCAAAGCCACCGCC
CCCAAAGCCACCACCACCAAAAATACTGCCATAACCACTACCAAAACCACCACGTCCACC
TCCTCCGGCCACACTTATGGAGATGCTTTTACTGCCACCAAGGTTAACGAGACTCCGACT
TCCAAAACCACCACCAGCTCCCCCTCCACATACTCCACTAGTAAACCTCCCACCACCTCC
ACCACTGCGGCGAACGGAGCTGCTGGTCGACCTGCGCTGGTAGCTGACCAGCCCAGCAGA
GCCAGAGCTGAAGCCCCCTCTTCCTCCTCCTCCACAGCGGTACCCAGACCTGGAGCTAAA
GTGTCGACTCATGTTGACTTAGAGAGAGAAGGAGCAATGTCGAGAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               189-296, - strand, RNAz p=0.939125

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               189-296, - strand, RNAz p=0.939125

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-408, gnl|bosTau2|chr5 (20195018-20195429)
               

               
               2-408, gnl|Hg17|chr12 (51360032-51360436)
               

               
               2-408, gnl|Mm7|chr15 (101836508-101836921)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-408, gnl|bosTau2|chr5 (20195018-20195429)
               

               
               2-408, gnl|Hg17|chr12 (51360032-51360436)
               

               
               2-408, gnl|Mm7|chr15 (101836508-101836921)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.36785)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.36785)
               

               
               eep (0.122564)

	2-408, gnl\|bosTau2\|chr5 (20195018-20195429)
	2-408, gnl\|Hg17\|chr12 (51360032-51360436)
	2-408, gnl\|Mm7\|chr15 (101836508-101836921)