Non-Coding RNA Search

Ss1.1-reep10c_k20.5

Sequence:


               
               CAACGAACAGAGTGGCCCTGGGGGTGTCCACTCCCAACAACCACCCGAAACGACGCCTAA
GACTCCGGGCAGGGATGCAGCTGGGGGTCTAGGGAAGCACATCTACCCCCTCCTCTCCTC
AGCCTTGACAGGGTGGTTTCCCAGGCCCCTCAAGACATTCATGGATGGATAAGAGGAGCT
GACACTGGCCTCCCCATCTGTGACCACCTTCTCTTCGGCCATGGAGGAAGCCTTGCTGCC
CCTGGCCATGACCTCTGACCCCAGGCCCTTTAATCAACAACTTCCAGAGCCTCCAGACCC
AAGATGTGTCTTGGAACCCCAGGACAATCCTGAATTGGCACCCGCCCTGGTGTGTGCTCT
TTGCTGCTGCTTTGGAATCATCTACTGCTGCTTCGGCTACCGCTGCTTCAAGGCAGTGAT
GTTTCTCTCCGGCCTGCTGTCAGGAGCTCTGGTGATCTTCCTGCTGTGCCACAAGGAACG
AGTGCTAGAGACACAGCTGAGCCTGGAGGTGAGCGCTGGCATTGCGCTAGGCATCGGACT
CCTCTGCGGCCTGGTCACCATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACGAACAGAGTGGCCCTGGGGGTGTCCACTCCCAACAACCACCCGAAACGACGCCTAA
GACTCCGGGCAGGGATGCAGCTGGGGGTCTAGGGAAGCACATCTACCCCCTCCTCTCCTC
AGCCTTGACAGGGTGGTTTCCCAGGCCCCTCAAGACATTCATGGATGGATAAGAGGAGCT
GACACTGGCCTCCCCATCTGTGACCACCTTCTCTTCGGCCATGGAGGAAGCCTTGCTGCC
CCTGGCCATGACCTCTGACCCCAGGCCCTTTAATCAACAACTTCCAGAGCCTCCAGACCC
AAGATGTGTCTTGGAACCCCAGGACAATCCTGAATTGGCACCCGCCCTGGTGTGTGCTCT
TTGCTGCTGCTTTGGAATCATCTACTGCTGCTTCGGCTACCGCTGCTTCAAGGCAGTGAT
GTTTCTCTCCGGCCTGCTGTCAGGAGCTCTGGTGATCTTCCTGCTGTGCCACAAGGAACG
AGTGCTAGAGACACAGCTGAGCCTGGAGGTGAGCGCTGGCATTGCGCTAGGCATCGGACT
CCTCTGCGGCCTGGTCACCATGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               254-373, - strand, RNAz p=0.600067

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               254-373, - strand, RNAz p=0.600067

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               135-396, gnl|bosTau2|chr5 (35043118-35042857)
               

               
               135-396, gnl|Hg17|chr12 (54512128-54512385)
               

               
               135-396, gnl|Mm7|chr10 (128305126-128304865)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               135-396, gnl|bosTau2|chr5 (35043118-35042857)
               

               
               135-396, gnl|Hg17|chr12 (54512128-54512385)
               

               
               135-396, gnl|Mm7|chr10 (128305126-128304865)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               eep (0.122564)

	135-396, gnl\|bosTau2\|chr5 (35043118-35042857)
	135-396, gnl\|Hg17\|chr12 (54512128-54512385)
	135-396, gnl\|Mm7\|chr10 (128305126-128304865)