Non-Coding RNA Search

Ss1.1-reep11c_b14.5

Sequence:


               
               GTTTCTTAGTGTCTCCACGTCTCAGTTTTCACATCTGTCAAATGCGTATAACAGTAGTTC
TCCTAGTTTGTTAAGAAGATGGAGCGAGTTAGTACATATGAGTACTTGGCACACAGGAAG
CGCTGATGGTGTTAGCTCAGGGTCTTCCTCCCTGCCAGCGCCTCATCCTTTGGGTCTAAC
TGCCACTTTCTTGGGAACTTTTTAATACCCCTGCATCCCCACAAAACCAGGTTAGGTGCT
GCCCCAATCATATTTTTCATTTGTGAGCTCTGCAAAGTTAAGGACATTGTCTGCCTTGTT
TCCACTACTGCCTTGCAAACAGTAGGTGTTCGGTACATGTGTCAGCGAGCAGAAAGGGGT
CTGGGGCTGGTGGTGCCCAGTATAGCTCAGGCCAGCTCTGTTTTTGTCTGGCTTCGGCAG
CCACAGGCTGGTACATGGACCACTTGGAGGAATGACCGTCCTCGGCTGCAGTGCCGGGAG
CACTCTGCTGGTCCAGGCAGGTGACATGCCAGTGCTTTTAGTGATGTCCCTGCCTGTAAC
CCAGAAGCCATGGAGGAGATAAGGTAGCCCCGGTCCCTGGATCTGATCGGATGGGGAAGC
CCAGTTCAATGGATACAAAATATAAGGATGACTTATTTCGGAAGTACGTGCAGTTCCATG
AGGGCAAAGTGGACACCACCCCCAGCAAGCAGCGGCCTGGCAGTGATGAGTACCTGCGGG
TGGCAGCCTCGACCCTGCTCAGCCTGCACAAGGTGGATCCCTTTTATCGATTCCGGCTGA
TCCAGTTCTATGAGGTGGTGGAGAGCTCCTTGCGCTCGCTGAGCTCCTCCAGCCTGCGGG
CTCTGCACTGCGCCTTCAGCGTGCTTGAGACGGTGGGCATCAACCTCTTCCTCTACCCGT
GGAAGAAGGAGTTCAGAAGCATCAAGACCTACACGGGCCCCTTTGTTTATTATGTCAAGT
CCACGTTACTGGAAGAGGACATCCGAGCCATCCTGAACTACATGGGCTATGTGCCCGAGT
TAGGGACGGCGTACAAGCTCAAAGAGCTGGTGGAGACCCTCCAGGTCAAGATGGTCACCT
TTGAACTCTTTCTGGCCAAGGTGGAGTGTGAGCAGATGCTGGAAATCCACTCCCAAGTCA
AGGACAAGGGCTACTCTGAGCTGGACGTGGTGAGCGAGCGCAAGAGCAGCACGGAGGACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCTTAGTGTCTCCACGTCTCAGTTTTCACATCTGTCAAATGCGTATAACAGTAGTTC
TCCTAGTTTGTTAAGAAGATGGAGCGAGTTAGTACATATGAGTACTTGGCACACAGGAAG
CGCTGATGGTGTTAGCTCAGGGTCTTCCTCCCTGCCAGCGCCTCATCCTTTGGGTCTAAC
TGCCACTTTCTTGGGAACTTTTTAATACCCCTGCATCCCCACAAAACCAGGTTAGGTGCT
GCCCCAATCATATTTTTCATTTGTGAGCTCTGCAAAGTTAAGGACATTGTCTGCCTTGTT
TCCACTACTGCCTTGCAAACAGTAGGTGTTCGGTACATGTGTCAGCGAGCAGAAAGGGGT
CTGGGGCTGGTGGTGCCCAGTATAGCTCAGGCCAGCTCTGTTTTTGTCTGGCTTCGGCAG
CCACAGGCTGGTACATGGACCACTTGGAGGAATGACCGTCCTCGGCTGCAGTGCCGGGAG
CACTCTGCTGGTCCAGGCAGGTGACATGCCAGTGCTTTTAGTGATGTCCCTGCCTGTAAC
CCAGAAGCCATGGAGGAGATAAGGTAGCCCCGGTCCCTGGATCTGATCGGATGGGGAAGC
CCAGTTCAATGGATACAAAATATAAGGATGACTTATTTCGGAAGTACGTGCAGTTCCATG
AGGGCAAAGTGGACACCACCCCCAGCAAGCAGCGGCCTGGCAGTGATGAGTACCTGCGGG
TGGCAGCCTCGACCCTGCTCAGCCTGCACAAGGTGGATCCCTTTTATCGATTCCGGCTGA
TCCAGTTCTATGAGGTGGTGGAGAGCTCCTTGCGCTCGCTGAGCTCCTCCAGCCTGCGGG
CTCTGCACTGCGCCTTCAGCGTGCTTGAGACGGTGGGCATCAACCTCTTCCTCTACCCGT
GGAAGAAGGAGTTCAGAAGCATCAAGACCTACACGGGCCCCTTTGTTTATTATGTCAAGT
CCACGTTACTGGAAGAGGACATCCGAGCCATCCTGAACTACATGGGCTATGTGCCCGAGT
TAGGGACGGCGTACAAGCTCAAAGAGCTGGTGGAGACCCTCCAGGTCAAGATGGTCACCT
TTGAACTCTTTCTGGCCAAGGTGGAGTGTGAGCAGATGCTGGAAATCCACTCCCAAGTCA
AGGACAAGGGCTACTCTGAGCTGGACGTGGTGAGCGAGCGCAAGAGCAGCACGGAGGACG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55652914|ref|XP_514717.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55652914|ref|XP_514717.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               809-926, + strand, RNAz p=0.753956

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               809-926, + strand, RNAz p=0.753956

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006038, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006038, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               441-926, gnl|bosTau2|chr13 (59927945-59928418)
               

               
               441-926, gnl|Hg17|chr20 (47958577-47958099)
               

               
               441-926, gnl|Mm7|chr2 (167226287-167225812)
               


               
               457-582, gnl|bosTau2|chr12 (16388163-16388038)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               441-926, gnl|bosTau2|chr13 (59927945-59928418)
               

               
               441-926, gnl|Hg17|chr20 (47958577-47958099)
               

               
               441-926, gnl|Mm7|chr2 (167226287-167225812)
               


               
               457-582, gnl|bosTau2|chr12 (16388163-16388038)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               cty (0.10408)

	441-926, gnl\|bosTau2\|chr13 (59927945-59928418)
	441-926, gnl\|Hg17\|chr20 (47958577-47958099)
	441-926, gnl\|Mm7\|chr2 (167226287-167225812)

	457-582, gnl\|bosTau2\|chr12 (16388163-16388038)