Non-Coding RNA Search

Ss1.1-reep11c_n3.5

Sequence:


               
               TTCAATGGTCCGGAGCAACTTTCTTTCCCTGCGGGGGCCATCACTTTAGTGACCCAGCAT
CTGTAACAACAGGAGGAGGCCCAGCCTCGTGATGAGGAATAGCAAAGAGAGAATTCAGCT
CCAGTTTAAAAGCCTTCAAAATCTGAGACTGTCACTGCTCTTGTAAGGATTCCAGCTTTC
ACTCCTGGCCAGAAATGTTCAGCCTGGACTCATTCAGAAAAGATCGGGCCCAGCACAGGC
AGCGTCAGTGCAAACTTCCCCCACCCCGTCTTCCACCCATGTGTGTCAACCCTGCCCCTG
GAGGGACCATCTCTCGAGGTAAGAGAGGAGCCACGCCTCCAGCACCAGCTTGGTCTAGGA
GCTGTGGGGAGGCGGGTGGCAGTGGAAACCTGGGTGCTATAAGCCTCTGGAAAGCAAGCA
AGGAGGAGTGGGGTTAGCAGAGCTTTCGGAGCCCTCAGGGAGACATCATTTGGAAAGGTC
TGAGTTATTTCATGATGCTTGGCCGCTTGGCTTAGACCCTGCAGTCTCACTGGGCCTCCT
GATATGACCAGGAATAAAGCCTAGGCTCAGTCTGGGGTCTGGTACCAATGTGGAGAATCA
GAGGGCTCAGACCTTTGGGCATTCTCTGACTCAGGTGCCTCAGAAAGTGCGGGGCACTTG
AAACAGGGCCAGAACAGAGAGCCCTGACTTGGCCCAGTGCCCTCCATCTCGGAGGCTTTG
GGAATGCTCATCACGTTACTCCCTTATCTCCCCCTGCACCTCAAAGCACTTTACTCACAG
TGAAACCTGTCTCAGCCTCTCCTTTTGATTTGGGAGAACATCAGAGCCCCCAGACAGGTG
ACAACTCACTTCAGATCCCACTGGTCCCAAGGATGGGACGAGTAACAGGGCCCATGGAAG
TGTTTCTTCCCACGAGTGTCTCTTCTCTTCCCTCAGACTTATACTTTTTTCCTGACCAGT
GCTCCTGGTGGCTTCTTTCTTATCCTGACAGCTGCCCTTCCCTGCTTCAATGGCTGCTTG
TTCACTCCCCTTCCCTAGTTTTTTTTTTAGTAGAAGAACACTATTGTAGTTCACAGACTC
TTGGCTCTATGTGGAGACAGCATGTCCATTATAGGCTCTGTAAAGTGCTTTGAAGGTCAA
GAGCTCAGGAAGGGTGTGGGGAGCATGCAGCACGCACTACCACCAAGTTCCCATGCAGTT
TCTACACGCACTGCTTTCCTGCTGCAGTGGCCCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAATGGTCCGGAGCAACTTTCTTTCCCTGCGGGGGCCATCACTTTAGTGACCCAGCAT
CTGTAACAACAGGAGGAGGCCCAGCCTCGTGATGAGGAATAGCAAAGAGAGAATTCAGCT
CCAGTTTAAAAGCCTTCAAAATCTGAGACTGTCACTGCTCTTGTAAGGATTCCAGCTTTC
ACTCCTGGCCAGAAATGTTCAGCCTGGACTCATTCAGAAAAGATCGGGCCCAGCACAGGC
AGCGTCAGTGCAAACTTCCCCCACCCCGTCTTCCACCCATGTGTGTCAACCCTGCCCCTG
GAGGGACCATCTCTCGAGGTAAGAGAGGAGCCACGCCTCCAGCACCAGCTTGGTCTAGGA
GCTGTGGGGAGGCGGGTGGCAGTGGAAACCTGGGTGCTATAAGCCTCTGGAAAGCAAGCA
AGGAGGAGTGGGGTTAGCAGAGCTTTCGGAGCCCTCAGGGAGACATCATTTGGAAAGGTC
TGAGTTATTTCATGATGCTTGGCCGCTTGGCTTAGACCCTGCAGTCTCACTGGGCCTCCT
GATATGACCAGGAATAAAGCCTAGGCTCAGTCTGGGGTCTGGTACCAATGTGGAGAATCA
GAGGGCTCAGACCTTTGGGCATTCTCTGACTCAGGTGCCTCAGAAAGTGCGGGGCACTTG
AAACAGGGCCAGAACAGAGAGCCCTGACTTGGCCCAGTGCCCTCCATCTCGGAGGCTTTG
GGAATGCTCATCACGTTACTCCCTTATCTCCCCCTGCACCTCAAAGCACTTTACTCACAG
TGAAACCTGTCTCAGCCTCTCCTTTTGATTTGGGAGAACATCAGAGCCCCCAGACAGGTG
ACAACTCACTTCAGATCCCACTGGTCCCAAGGATGGGACGAGTAACAGGGCCCATGGAAG
TGTTTCTTCCCACGAGTGTCTCTTCTCTTCCCTCAGACTTATACTTTTTTCCTGACCAGT
GCTCCTGGTGGCTTCTTTCTTATCCTGACAGCTGCCCTTCCCTGCTTCAATGGCTGCTTG
TTCACTCCCCTTCCCTAGTTTTTTTTTTAGTAGAAGAACACTATTGTAGTTCACAGACTC
TTGGCTCTATGTGGAGACAGCATGTCCATTATAGGCTCTGTAAAGTGCTTTGAAGGTCAA
GAGCTCAGGAAGGGTGTGGGGAGCATGCAGCACGCACTACCACCAAGTTCCCATGCAGTT
TCTACACGCACTGCTTTCCTGCTGCAGTGGCCCTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               300-410, + strand, RNAz p=0.920192

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               300-410, + strand, RNAz p=0.920192

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC038417, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC038417, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-168, gnl|bosTau2|chr22 (40626400-40626567)
               

               
               1-168, gnl|canFam2|chr20 (44128685-44128484)
               

               
               1-168, gnl|hg17|chr3 (47821668-47821850)
               

               
               1-168, gnl|Hg17|chr3 (47821754-47821915)
               

               
               1-168, gnl|loxAfr1|scaffold_8619 (32679-32869)
               

               
               1-168, gnl|mm7|chr9 (109812568-109812416)
               

               
               1-168, gnl|Mm7|chr9 (109812513-109812349)
               

               
               1-168, gnl|monDom2|scaffold_5 (82811923-82812130)
               

               
               1-168, gnl|panTro1|chr2 (49298725-49298907)
               

               
               1-168, gnl|rheMac2|chr2 (88714813-88714624)
               

               
               1-168, gnl|rn3|chr8 (114488171-114488020)
               


               
               221-1171, gnl|bosTau2|chr22 (40632969-40633926)
               

               
               221-1171, gnl|Hg17|chr3 (47834514-47835509)
               

               
               221-1171, gnl|Mm7|chr9 (109805982-109805059)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-168, gnl|bosTau2|chr22 (40626400-40626567)
               

               
               1-168, gnl|canFam2|chr20 (44128685-44128484)
               

               
               1-168, gnl|hg17|chr3 (47821668-47821850)
               

               
               1-168, gnl|Hg17|chr3 (47821754-47821915)
               

               
               1-168, gnl|loxAfr1|scaffold_8619 (32679-32869)
               

               
               1-168, gnl|mm7|chr9 (109812568-109812416)
               

               
               1-168, gnl|Mm7|chr9 (109812513-109812349)
               

               
               1-168, gnl|monDom2|scaffold_5 (82811923-82812130)
               

               
               1-168, gnl|panTro1|chr2 (49298725-49298907)
               

               
               1-168, gnl|rheMac2|chr2 (88714813-88714624)
               

               
               1-168, gnl|rn3|chr8 (114488171-114488020)
               


               
               221-1171, gnl|bosTau2|chr22 (40632969-40633926)
               

               
               221-1171, gnl|Hg17|chr3 (47834514-47835509)
               

               
               221-1171, gnl|Mm7|chr9 (109805982-109805059)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.245128)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               med (0.116252)

	1-168, gnl\|bosTau2\|chr22 (40626400-40626567)
	1-168, gnl\|canFam2\|chr20 (44128685-44128484)
	1-168, gnl\|hg17\|chr3 (47821668-47821850)
	1-168, gnl\|Hg17\|chr3 (47821754-47821915)
	1-168, gnl\|loxAfr1\|scaffold_8619 (32679-32869)
	1-168, gnl\|mm7\|chr9 (109812568-109812416)
	1-168, gnl\|Mm7\|chr9 (109812513-109812349)
	1-168, gnl\|monDom2\|scaffold_5 (82811923-82812130)
	1-168, gnl\|panTro1\|chr2 (49298725-49298907)
	1-168, gnl\|rheMac2\|chr2 (88714813-88714624)
	1-168, gnl\|rn3\|chr8 (114488171-114488020)

	221-1171, gnl\|bosTau2\|chr22 (40632969-40633926)
	221-1171, gnl\|Hg17\|chr3 (47834514-47835509)
	221-1171, gnl\|Mm7\|chr9 (109805982-109805059)