Non-Coding RNA Search

Ss1.1-reep11c_n7.5

Sequence:


               
               GGACAGATAAACTTTGGTGCAGATGCTAGCCAACATAAAGATGAGAACACAGACATCGCT
GAAAACCTCTATCAGAAGGTTAAAATTCTTTGCTGGGTAATGACAGGGCCTCAAAATCTA
GAGAAAAAGGCCAAACATGTCAAAGCTACATGGGCCCAGCGTTGTAACAAGGTGTTGTTT
ATGAGTTCAGAAGAAAATAAAGACTTCCCTGCTGTGGGATTAAACACCAGAGAAGGCAGA
GACCAACTGTACTGGAAAACAATTAAAGCTTTTCAGTATGTTCATGATCATTATTTAGAA
GATGCCGATTGGTTTTTGAAAGCAGATGATGATACGTATGTTATACTAGATAACTTGAGA
TGGCTTCTTTCAAAATACAACCCTGAAGAACCCATTTACTTTGGGAGAAGATTTAAGCCC
TATGTAAAGCAGGGCTACATGAGCGGAGGTGCAGGGTATGTACTGAGTAAAGAAGCCTTG
AAGAGATTTGTTGATGGATTTAAAACAGACAGATGTACACATAGTTCCTCCATCGAAGAT
TTAGCTCTGGGGAGATGCATGGAAATTGTAAATGTAGAAGCGGGAGATTCCAGAGACACC
ACTGGAAAAGAAACTTTTCATCCCTTTGTACCAGAACACCACTTAATCAAGGGGTATCTG
CCTAGAACCTTTTGGTACTGGAATTATAACTATTATCCTCCTGTAGAGGGTCCTGGTTGC
TGTTCTGATCTTGCAGTTTCTTTTCACTATGTTGATCCTACAACTATGTATGAGTTAGAA
TACCTCGTTTATCATCTTCGTCCATATGGTTATTTATACAGATATCAACCTGCCTTACCT
GAAAAGATGCTAAAGGAAATAAGTCAAGTATACAAAAATGAAGATCCAAAAGTAAATTGA
GAACTCTTGAAAGAAAAACATAACAGGTGTAAAATGTCTAGCACTGCACTGAAGAACTTC
TCCATTTCTGATGTAGAACACTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACAGATAAACTTTGGTGCAGATGCTAGCCAACATAAAGATGAGAACACAGACATCGCT
GAAAACCTCTATCAGAAGGTTAAAATTCTTTGCTGGGTAATGACAGGGCCTCAAAATCTA
GAGAAAAAGGCCAAACATGTCAAAGCTACATGGGCCCAGCGTTGTAACAAGGTGTTGTTT
ATGAGTTCAGAAGAAAATAAAGACTTCCCTGCTGTGGGATTAAACACCAGAGAAGGCAGA
GACCAACTGTACTGGAAAACAATTAAAGCTTTTCAGTATGTTCATGATCATTATTTAGAA
GATGCCGATTGGTTTTTGAAAGCAGATGATGATACGTATGTTATACTAGATAACTTGAGA
TGGCTTCTTTCAAAATACAACCCTGAAGAACCCATTTACTTTGGGAGAAGATTTAAGCCC
TATGTAAAGCAGGGCTACATGAGCGGAGGTGCAGGGTATGTACTGAGTAAAGAAGCCTTG
AAGAGATTTGTTGATGGATTTAAAACAGACAGATGTACACATAGTTCCTCCATCGAAGAT
TTAGCTCTGGGGAGATGCATGGAAATTGTAAATGTAGAAGCGGGAGATTCCAGAGACACC
ACTGGAAAAGAAACTTTTCATCCCTTTGTACCAGAACACCACTTAATCAAGGGGTATCTG
CCTAGAACCTTTTGGTACTGGAATTATAACTATTATCCTCCTGTAGAGGGTCCTGGTTGC
TGTTCTGATCTTGCAGTTTCTTTTCACTATGTTGATCCTACAACTATGTATGAGTTAGAA
TACCTCGTTTATCATCTTCGTCCATATGGTTATTTATACAGATATCAACCTGCCTTACCT
GAAAAGATGCTAAAGGAAATAAGTCAAGTATACAAAAATGAAGATCCAAAAGTAAATTGA
GAACTCTTGAAAGAAAAACATAACAGGTGTAAAATGTCTAGCACTGCACTGAAGAACTTC
TCCATTTCTGATGTAGAACACTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19484215|gb|AAH25899.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19484215|gb|AAH25899.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-481, gnl|bosTau2|chr14 (15261761-15262237)
               

               
               1-481, gnl|Hg17|chr8 (62985823-62985336)
               

               
               1-481, gnl|Mm7|chr6 (7821896-7824610)
               


               
               5-221, gnl|bosTau2|chr12 (42702425-42702207)
               

               
               5-221, gnl|Hg17|chr5 (55524316-55524532)
               

               
               5-221, gnl|Mm7|chr6 (7824168-7824350)
               


               
               6-192, gnl|bosTau2|chr10 (25827611-25827429)
               

               
               6-192, gnl|Hg17|chr15 (39109170-39108988)
               

               
               6-192, gnl|Mm7|chr6 (7821901-7824340)
               


               
               260-412, gnl|bosTau2|chr10 (25826548-25826397)
               

               
               260-412, gnl|Hg17|chr15 (39108953-39108791)
               

               
               260-412, gnl|Mm7|chr6 (7824389-7824541)
               


               
               635-984, gnl|bosTau2|chr14 (15263192-15263522)
               

               
               635-984, gnl|Hg17|chr8 (62985182-62984827)
               

               
               635-984, gnl|Mm7|chr6 (7824764-7829111)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-481, gnl|bosTau2|chr14 (15261761-15262237)
               

               
               1-481, gnl|Hg17|chr8 (62985823-62985336)
               

               
               1-481, gnl|Mm7|chr6 (7821896-7824610)
               


               
               5-221, gnl|bosTau2|chr12 (42702425-42702207)
               

               
               5-221, gnl|Hg17|chr5 (55524316-55524532)
               

               
               5-221, gnl|Mm7|chr6 (7824168-7824350)
               


               
               6-192, gnl|bosTau2|chr10 (25827611-25827429)
               

               
               6-192, gnl|Hg17|chr15 (39109170-39108988)
               

               
               6-192, gnl|Mm7|chr6 (7821901-7824340)
               


               
               260-412, gnl|bosTau2|chr10 (25826548-25826397)
               

               
               260-412, gnl|Hg17|chr15 (39108953-39108791)
               

               
               260-412, gnl|Mm7|chr6 (7824389-7824541)
               


               
               635-984, gnl|bosTau2|chr14 (15263192-15263522)
               

               
               635-984, gnl|Hg17|chr8 (62985182-62984827)
               

               
               635-984, gnl|Mm7|chr6 (7824764-7829111)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               mcp (0.170648)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               eep (0.122564)

	1-481, gnl\|bosTau2\|chr14 (15261761-15262237)
	1-481, gnl\|Hg17\|chr8 (62985823-62985336)
	1-481, gnl\|Mm7\|chr6 (7821896-7824610)

	5-221, gnl\|bosTau2\|chr12 (42702425-42702207)
	5-221, gnl\|Hg17\|chr5 (55524316-55524532)
	5-221, gnl\|Mm7\|chr6 (7824168-7824350)

	6-192, gnl\|bosTau2\|chr10 (25827611-25827429)
	6-192, gnl\|Hg17\|chr15 (39109170-39108988)
	6-192, gnl\|Mm7\|chr6 (7821901-7824340)

	260-412, gnl\|bosTau2\|chr10 (25826548-25826397)
	260-412, gnl\|Hg17\|chr15 (39108953-39108791)
	260-412, gnl\|Mm7\|chr6 (7824389-7824541)

	635-984, gnl\|bosTau2\|chr14 (15263192-15263522)
	635-984, gnl\|Hg17\|chr8 (62985182-62984827)
	635-984, gnl\|Mm7\|chr6 (7824764-7829111)