Ss1.1-reep12c_f2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACGAGACGCGAGAGCTGAATCCGCACCTCAGACCAGCAGCTGCAGTCGCTGCTATGGG TCTCTGCCCCTACCGCGCCGCCCTGCTTCCGAGTGTCCTCCTGTTCCTCCTGATGCTCAC AGACCCGGCGCTCCCAGCCGGACGTCCCCCACCGGTGGTGCTAGTGCCCGGCGATTTGGG CAACCAGCTGGAGGCAAAGCTGGACAAGCCGTCAGTCGTGCACTACCTCTGCTCCAAGAG GACCATCAGCTACTTCACACTCTGGCTGAACCTAGAGCTGCTGCTGCCTGTCATCGTCGA CTGCTGGATTGACAATATCAGGCTGGTCTATAACAGAACAACCCACGCCACCCAGTTTCC CGATGGTGTTGATGTGCGTGTCCCTGGCTTTGGGCAGACCTTCTCGCTGGAGCTCCTGGA CCCCAGCAAAAGCAGTGTGGGTTCCTATCTTCACACCATGGTGGAGAGCCTTGTAGGCTG GGGCTACACACGAAGCGAGGATGTCCGAGGGGCCCCCTACGATTGGCGCCGAGCCCCAAA TGAAAATGGGCCCTACTTCCTGGCCCTCCGCGAGATGATCGAGGAGATGCACCAGCTGTA TGGGGGCCCCGTGGTGCTGGTTGCCCACAGTATGGGCAACATGTACACGCTCTACTTTCT GCAGCGGCAGCCACAGGCCTGGAAGGACAAGTACATCCGTGCCTTCGTGGCACTGGGTCC GCCCTGGGGGGGCGTGGCCAAGACCCTGCGTGTCCTGGCCTCAGGAGACAACAACCGTAT CCCGGTCATCAGGCCCCTGAAGATCCGGGAGCAGCAGCGGTCTGCCGTCTCCACCAGCTG GCTGCTGCCCTACAACTATTCCTGGTCACCTGAAAAGGTCTTCTTGCACACGCCCACGAC CAACTACACGCTGCAGGACTATCGCAGGTTCTTCCAGGACATTGGCTTCAAAGATGGCTG GCTCATGCGGCAGGACACGGAGGGGCTGGTTGACGCCATGGTGCCGCCTGGTGTGCAGCT GCATTGCCTCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACGAGACGCGAGAGCTGAATCCGCACCTCAGACCAGCAGCTGCAGTCGCTGCTATGGG TCTCTGCCCCTACCGCGCCGCCCTGCTTCCGAGTGTCCTCCTGTTCCTCCTGATGCTCAC AGACCCGGCGCTCCCAGCCGGACGTCCCCCACCGGTGGTGCTAGTGCCCGGCGATTTGGG CAACCAGCTGGAGGCAAAGCTGGACAAGCCGTCAGTCGTGCACTACCTCTGCTCCAAGAG GACCATCAGCTACTTCACACTCTGGCTGAACCTAGAGCTGCTGCTGCCTGTCATCGTCGA CTGCTGGATTGACAATATCAGGCTGGTCTATAACAGAACAACCCACGCCACCCAGTTTCC CGATGGTGTTGATGTGCGTGTCCCTGGCTTTGGGCAGACCTTCTCGCTGGAGCTCCTGGA CCCCAGCAAAAGCAGTGTGGGTTCCTATCTTCACACCATGGTGGAGAGCCTTGTAGGCTG GGGCTACACACGAAGCGAGGATGTCCGAGGGGCCCCCTACGATTGGCGCCGAGCCCCAAA TGAAAATGGGCCCTACTTCCTGGCCCTCCGCGAGATGATCGAGGAGATGCACCAGCTGTA TGGGGGCCCCGTGGTGCTGGTTGCCCACAGTATGGGCAACATGTACACGCTCTACTTTCT GCAGCGGCAGCCACAGGCCTGGAAGGACAAGTACATCCGTGCCTTCGTGGCACTGGGTCC GCCCTGGGGGGGCGTGGCCAAGACCCTGCGTGTCCTGGCCTCAGGAGACAACAACCGTAT CCCGGTCATCAGGCCCCTGAAGATCCGGGAGCAGCAGCGGTCTGCCGTCTCCACCAGCTG GCTGCTGCCCTACAACTATTCCTGGTCACCTGAAAAGGTCTTCTTGCACACGCCCACGAC CAACTACACGCTGCAGGACTATCGCAGGTTCTTCCAGGACATTGGCTTCAAAGATGGCTG GCTCATGCGGCAGGACACGGAGGGGCTGGTTGACGCCATGGTGCCGCCTGGTGTGCAGCT GCATTGCCTCTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 759-877, - strand, RNAz p=0.97141 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 759-877, - strand, RNAz p=0.97141 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 3-162, gnl|bosTau2|chr18 (14733688-14733526) | |
| 3-162, gnl|Hg17|chr16 (66836777-66836955) | |
| 3-162, gnl|Mm7|chr8 (104749288-104749466) | |
| 163-322, gnl|bosTau2|chr18 (14727461-14727302) | |
| 163-322, gnl|canFam2|chr5 (84285329-84285141) | |
| 163-322, gnl|danRer3|chrNA (226209222-226209391) | |
| 163-322, gnl|dasNov1|scaffold_19313 (52678-52504) | |
| 163-322, gnl|echTel1|scaffold_190315 (5324-5146) | |
| 163-322, gnl|fr1|chrUn (213566981-213567158) | |
| 163-322, gnl|galGal2|chr11 (59357-59525) | |
| 163-322, gnl|hg17|chr16 (66840684-66840876) | |
| 163-322, gnl|Hg17|chr16 (66840692-66840851) | |
| 163-322, gnl|mm7|chr8 (104753713-104753905) | |
| 163-322, gnl|Mm7|chr8 (104753721-104753880) | |
| 163-322, gnl|monDom2|scaffold_23 (17579635-17579463) | |
| 163-322, gnl|oryCun1|scaffold_204307 (28719-28888) | |
| 163-322, gnl|panTro1|chr18 (61152726-61152918) | |
| 163-322, gnl|rheMac2|chr20 (66590949-66591140) | |
| 163-322, gnl|rn3|chr19 (36006906-36007096) | |
| 163-322, gnl|tetNig1|chrUn_random (24817019-24817188) | |
| 163-322, gnl|xenTro1|scaffold_145 (1539745-1539914) | |
| 759-1032, gnl|bosTau2|chr18 (14721859-14721586) | |
| 759-1032, gnl|Hg17|chr16 (66850544-66850817) | |
| 759-1032, gnl|Mm7|chr8 (104761674-104761947) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-162, gnl|bosTau2|chr18 (14733688-14733526) | |
| 3-162, gnl|Hg17|chr16 (66836777-66836955) | |
| 3-162, gnl|Mm7|chr8 (104749288-104749466) | |
| 163-322, gnl|bosTau2|chr18 (14727461-14727302) | |
| 163-322, gnl|canFam2|chr5 (84285329-84285141) | |
| 163-322, gnl|danRer3|chrNA (226209222-226209391) | |
| 163-322, gnl|dasNov1|scaffold_19313 (52678-52504) | |
| 163-322, gnl|echTel1|scaffold_190315 (5324-5146) | |
| 163-322, gnl|fr1|chrUn (213566981-213567158) | |
| 163-322, gnl|galGal2|chr11 (59357-59525) | |
| 163-322, gnl|hg17|chr16 (66840684-66840876) | |
| 163-322, gnl|Hg17|chr16 (66840692-66840851) | |
| 163-322, gnl|mm7|chr8 (104753713-104753905) | |
| 163-322, gnl|Mm7|chr8 (104753721-104753880) | |
| 163-322, gnl|monDom2|scaffold_23 (17579635-17579463) | |
| 163-322, gnl|oryCun1|scaffold_204307 (28719-28888) | |
| 163-322, gnl|panTro1|chr18 (61152726-61152918) | |
| 163-322, gnl|rheMac2|chr20 (66590949-66591140) | |
| 163-322, gnl|rn3|chr19 (36006906-36007096) | |
| 163-322, gnl|tetNig1|chrUn_random (24817019-24817188) | |
| 163-322, gnl|xenTro1|scaffold_145 (1539745-1539914) | |
| 759-1032, gnl|bosTau2|chr18 (14721859-14721586) | |
| 759-1032, gnl|Hg17|chr16 (66850544-66850817) | |
| 759-1032, gnl|Mm7|chr8 (104761674-104761947) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |