Ss1.1-reep12c_j19.5.5
|
GCAGAACGGATGTTTACTGATTCGGCGGCGCGGAGAAGCGAGGGGCGAGCGGTCTGCGCA
GAGGCGGGTCGCGGGAAGGGGGGTTCCAGGCCGCTGCAGGGGTCACAGAGCCCCGGAGCC
AGGGTCCTGGCAGCCTTGGAGCCTAGACCTCCGGACAGGGGCCTCAGACAGAGGCGTGCT
GGTGAATGGTCACCTGCAGGCTCTTGGGGGACTGCTTCGTAGTGCCTTTTTCGGGGTGTA
AATAGTCCCACCCTGGCCGATTTCAAGCCACCAGGTCAGGGCACTCAAGGAGGAGCGGCC
ACTCGCAGCATCTTCCACTGTGGCTCCAGCTGCCCCCTCAAGTGCATCAGGGCTTGCATG
GTCTCTAGGGAGGCCATGCAGAAGGGGCCCAGGCTGGGGGGTGCCTCTCCATGCAGCACC
CTGGCCAGGACCACCGCAAGCTGGGGTGTGGACTCCTCATCCACAAGGGCCAAGACTCGG
CCCCCTGCTGGGCCCCGAAGCAGTGCAGCCAGGAGTGCAGCTTGGGGGTCCTGCAGGCCA
TGAGCAGGCCCCAGTACCACCAGCACCAGGTCAGGCTGGAAGCTGTAGGCCAGGGGCAGC
ACCAGGGCCAGGACACAGCTCAGGAACCCACCGGTTGTCCTTGGCAGTGGCACAGAGACG
TGGAACATGGACAGGGCAGCTGCCTCTTTGCCCCCGACGTTCAGCCATAGAGTCCCCCCG
TCATCGGTGAGATGGGGGGGCCGATCCAGCTGTCCCACAGCCACACAAAGCAGCCTCTGG
GCTCCGTGGGAGAGGCCACACCGAATGGCCACGTCCAGGGTGGCAGCTACAGCAGGGCCT
GGGGTGGCTGCAATGCCGCTGCTCACCTGCCCATCCAGGATCCTGTCCAAGAGGTGCAGG
ACCCTCCCAAGTGCAGAGAGGGCCTTATCCTGGGCCAGGGCCTCGTGTGGCCTGGCCCAG
GCCTGCGTCTCCTCCTGTGGGGCTGACCCCTCCTGACAGAGGACGTCATGGGGCAGGACC
AGGTCACCGTCCAGTGGCGCAGGCAAGGCAAGAGCAGTGCGGACAGGGGGTGTGGGACGG
AGGCGTAGCTGGTCCAGGAGGGAGCTGAGTGCAGCCACGGCCTGGGCTGCTGCTGTCTTG
AACTCAGGCCCCGCAGGCATTGGAGGGGAGGGCCCCTGCCCCGGGGAGCGAGTGCTGGAA
CTCAGTACAGGGGCCACACCTTGCTGCCGGAGGCTCATCCAGTGAGGGGCCTGCGCTGCC
CGGACACTCTGGATGGACTGCAGGGCGCTGCCATGCGGCACCATGGGCCCTGAGAGCGGC
GGGGCGGGGTCGCCGAGCAGCGCTTGTACCATCATGCACACGGACTGGGAGAGGGACTCC
AGGTGGTAGCCACCCTGGGAGCAC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCAGAACGGATGTTTACTGATTCGGCGGCGCGGAGAAGCGAGGGGCGAGCGGTCTGCGCA
GAGGCGGGTCGCGGGAAGGGGGGTTCCAGGCCGCTGCAGGGGTCACAGAGCCCCGGAGCC
AGGGTCCTGGCAGCCTTGGAGCCTAGACCTCCGGACAGGGGCCTCAGACAGAGGCGTGCT
GGTGAATGGTCACCTGCAGGCTCTTGGGGGACTGCTTCGTAGTGCCTTTTTCGGGGTGTA
AATAGTCCCACCCTGGCCGATTTCAAGCCACCAGGTCAGGGCACTCAAGGAGGAGCGGCC
ACTCGCAGCATCTTCCACTGTGGCTCCAGCTGCCCCCTCAAGTGCATCAGGGCTTGCATG
GTCTCTAGGGAGGCCATGCAGAAGGGGCCCAGGCTGGGGGGTGCCTCTCCATGCAGCACC
CTGGCCAGGACCACCGCAAGCTGGGGTGTGGACTCCTCATCCACAAGGGCCAAGACTCGG
CCCCCTGCTGGGCCCCGAAGCAGTGCAGCCAGGAGTGCAGCTTGGGGGTCCTGCAGGCCA
TGAGCAGGCCCCAGTACCACCAGCACCAGGTCAGGCTGGAAGCTGTAGGCCAGGGGCAGC
ACCAGGGCCAGGACACAGCTCAGGAACCCACCGGTTGTCCTTGGCAGTGGCACAGAGACG
TGGAACATGGACAGGGCAGCTGCCTCTTTGCCCCCGACGTTCAGCCATAGAGTCCCCCCG
TCATCGGTGAGATGGGGGGGCCGATCCAGCTGTCCCACAGCCACACAAAGCAGCCTCTGG
GCTCCGTGGGAGAGGCCACACCGAATGGCCACGTCCAGGGTGGCAGCTACAGCAGGGCCT
GGGGTGGCTGCAATGCCGCTGCTCACCTGCCCATCCAGGATCCTGTCCAAGAGGTGCAGG
ACCCTCCCAAGTGCAGAGAGGGCCTTATCCTGGGCCAGGGCCTCGTGTGGCCTGGCCCAG
GCCTGCGTCTCCTCCTGTGGGGCTGACCCCTCCTGACAGAGGACGTCATGGGGCAGGACC
AGGTCACCGTCCAGTGGCGCAGGCAAGGCAAGAGCAGTGCGGACAGGGGGTGTGGGACGG
AGGCGTAGCTGGTCCAGGAGGGAGCTGAGTGCAGCCACGGCCTGGGCTGCTGCTGTCTTG
AACTCAGGCCCCGCAGGCATTGGAGGGGAGGGCCCCTGCCCCGGGGAGCGAGTGCTGGAA
CTCAGTACAGGGGCCACACCTTGCTGCCGGAGGCTCATCCAGTGAGGGGCCTGCGCTGCC
CGGACACTCTGGATGGACTGCAGGGCGCTGCCATGCGGCACCATGGGCCCTGAGAGCGGC
GGGGCGGGGTCGCCGAGCAGCGCTTGTACCATCATGCACACGGACTGGGAGAGGGACTCC
AGGTGGTAGCCACCCTGGGAGCAC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
96-296, gnl|bosTau2|chr5 (76017539-76017339) |
|
96-296, gnl|Hg17|chr22 (48986227-48986429) |
| |
|
455-652, gnl|bosTau2|chr5 (76016938-76016741) |
|
455-652, gnl|canFam2|chr10 (19990819-19990617) |
|
455-652, gnl|danRer3|chr21 (38733997-38733812) |
|
455-652, gnl|dasNov1|scaffold_38401 (12191-11985) |
|
455-652, gnl|echTel1|scaffold_162194 (4100-3901) |
|
455-652, gnl|fr1|chrUn (66760282-66760096) |
|
455-652, gnl|hg17|chr22 (48986776-48986978) |
|
455-652, gnl|Hg17|chr22 (48986795-48986989) |
|
455-652, gnl|mm7|chr15 (89206134-89206336) |
|
455-652, gnl|Mm7|chr15 (89206153-89206347) |
|
455-652, gnl|monDom2|scaffold_119 (539758-539942) |
|
455-652, gnl|oryCun1|scaffold_169556 (304-99) |
|
455-652, gnl|panTro1|chr23 (49433653-49433855) |
|
455-652, gnl|rheMac2|chr10 (94250369-94250571) |
|
455-652, gnl|rn3|chr7 (127458443-127458645) |
|
455-652, gnl|tetNig1|chr13 (9031823-9031659) |
| |
|
904-1221, gnl|bosTau2|chr5 (76015456-76015138) |
|
904-1221, gnl|Hg17|chr22 (48988716-48989033) |
|
904-1221, gnl|Mm7|chr15 (89207777-89208086) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
96-296, gnl|bosTau2|chr5 (76017539-76017339) |
|
96-296, gnl|Hg17|chr22 (48986227-48986429) |
| |
|
455-652, gnl|bosTau2|chr5 (76016938-76016741) |
|
455-652, gnl|canFam2|chr10 (19990819-19990617) |
|
455-652, gnl|danRer3|chr21 (38733997-38733812) |
|
455-652, gnl|dasNov1|scaffold_38401 (12191-11985) |
|
455-652, gnl|echTel1|scaffold_162194 (4100-3901) |
|
455-652, gnl|fr1|chrUn (66760282-66760096) |
|
455-652, gnl|hg17|chr22 (48986776-48986978) |
|
455-652, gnl|Hg17|chr22 (48986795-48986989) |
|
455-652, gnl|mm7|chr15 (89206134-89206336) |
|
455-652, gnl|Mm7|chr15 (89206153-89206347) |
|
455-652, gnl|monDom2|scaffold_119 (539758-539942) |
|
455-652, gnl|oryCun1|scaffold_169556 (304-99) |
|
455-652, gnl|panTro1|chr23 (49433653-49433855) |
|
455-652, gnl|rheMac2|chr10 (94250369-94250571) |
|
455-652, gnl|rn3|chr7 (127458443-127458645) |
|
455-652, gnl|tetNig1|chr13 (9031823-9031659) |
| |
|
904-1221, gnl|bosTau2|chr5 (76015456-76015138) |
|
904-1221, gnl|Hg17|chr22 (48988716-48989033) |
|
904-1221, gnl|Mm7|chr15 (89207777-89208086) |
|
col (0.195008) |
|
nep (0.183925) |
|
ill (0.175593) |
|
nco (0.161734) |
|
csp (0.161186) |
|
cst (0.140036) |
|
pla (0.133672) |
|
ute (0.132784) |
|
eep (0.122564) |
|
med (0.116252) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
col (0.195008) |
|
nep (0.183925) |
|
ill (0.175593) |
|
nco (0.161734) |
|
csp (0.161186) |
|
cst (0.140036) |
|
pla (0.133672) |
|
ute (0.132784) |
|
eep (0.122564) |
|
med (0.116252) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
