Ss1.1-reep12c_m17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGATGCCAAGCAATGTGCAAGCCTGAATGGTGTCAACCGGGATTCCCACATGATGGCG TCAATGCTTTCCAATCTGGACCGCAGCCAGCCCTGGTCTCCCTGCAGCGCCTACATGATT ACGTCATTTCTGGATAACGGTCACGGAGAATGCTTGATGGACAAGCCCCAGAGCCCCATA CAGCTCCCCTCTGACCTCCCCGGGACCTTGTATGATGCCAACCGGCAGTGCCAGTTTACG TTTGGGGAGGAGTCCAAACACTGCCCTGACCCAGCCAGCACTTGCACGACCCTCTGGTGC ACGGGCACCTCAGGTGGATTGCTGGTGTGCCAAACCAAACACTTCCCCTGGGCTGACGGC ACCAGCTGTGGAGAAGGGAAATGGTGTGTCAACGGCAAGTGCGTGAACAAGACCGACAAG AAGCATTTTGATACTCCTGTTCATGGAAGCTGGGGGCCGTGGGGTCCCTGGGGAGATTGT TCCAGAACGTGTGGTGGAGGAGTTCAGTACACCATGAGGGAGTGTGACAACCCAGTCCCC AAGAACGGAGGGAAGTACTGCGAGGGCAAGCGCGTGCGCTACAGGTCCTGCAACATCGAG GACTGTCCGGAAAATAATGGAAAAACCTTTAGAGAGGAACAGTGTGAGGCACACAATGAA TTCTCCAAAGCTTCCTTTGGGAGTGGGCCAGCTGTGGAGTGGACACCCAAGTACGCTGGA GTCTCACCCAAGGACAGGTGCAAGCTCATCTGTCAGGCCAAAGGCATTGGCTACTTCTTC GTTCTGCAGCCCAAGGTGGTAGATGGTACTCCTTGTAGCCCAGATTCCACCTCTGTCTGC GTACAAGGACAGTGTGTAAAGGCTGGTTGTGATCGCATCATAGATTCCAAAAAGAAGTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGATGCCAAGCAATGTGCAAGCCTGAATGGTGTCAACCGGGATTCCCACATGATGGCG TCAATGCTTTCCAATCTGGACCGCAGCCAGCCCTGGTCTCCCTGCAGCGCCTACATGATT ACGTCATTTCTGGATAACGGTCACGGAGAATGCTTGATGGACAAGCCCCAGAGCCCCATA CAGCTCCCCTCTGACCTCCCCGGGACCTTGTATGATGCCAACCGGCAGTGCCAGTTTACG TTTGGGGAGGAGTCCAAACACTGCCCTGACCCAGCCAGCACTTGCACGACCCTCTGGTGC ACGGGCACCTCAGGTGGATTGCTGGTGTGCCAAACCAAACACTTCCCCTGGGCTGACGGC ACCAGCTGTGGAGAAGGGAAATGGTGTGTCAACGGCAAGTGCGTGAACAAGACCGACAAG AAGCATTTTGATACTCCTGTTCATGGAAGCTGGGGGCCGTGGGGTCCCTGGGGAGATTGT TCCAGAACGTGTGGTGGAGGAGTTCAGTACACCATGAGGGAGTGTGACAACCCAGTCCCC AAGAACGGAGGGAAGTACTGCGAGGGCAAGCGCGTGCGCTACAGGTCCTGCAACATCGAG GACTGTCCGGAAAATAATGGAAAAACCTTTAGAGAGGAACAGTGTGAGGCACACAATGAA TTCTCCAAAGCTTCCTTTGGGAGTGGGCCAGCTGTGGAGTGGACACCCAAGTACGCTGGA GTCTCACCCAAGGACAGGTGCAAGCTCATCTGTCAGGCCAAAGGCATTGGCTACTTCTTC GTTCTGCAGCCCAAGGTGGTAGATGGTACTCCTTGTAGCCCAGATTCCACCTCTGTCTGC GTACAAGGACAGTGTGTAAAGGCTGGTTGTGATCGCATCATAGATTCCAAAAAGAAGTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 619-778, + strand, RNAz p=0.789334 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 619-778, + strand, RNAz p=0.789334 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 145-432, gnl|bosTau2|chr1 (5837987-5837700) | |
| 145-432, gnl|canFam2|chr31 (25191451-25191750) | |
| 145-432, gnl|danRer3|chrUn (105092300-105092603) | |
| 145-432, gnl|dasNov1|scaffold_19811 (8355-8056) | |
| 145-432, gnl|echTel1|scaffold_280254 (94253-94552) | |
| 145-432, gnl|fr1|chrUn (258000629-258000923) | |
| 145-432, gnl|galGal2|chr1 (96804165-96804457) | |
| 145-432, gnl|hg17|chr21 (27134449-27134748) | |
| 145-432, gnl|Hg17|chr21 (27134753-27134466) | |
| 145-432, gnl|loxAfr1|scaffold_2276 (58643-58942) | |
| 145-432, gnl|mm7|chr16 (85794318-85794617) | |
| 145-432, gnl|Mm7|chr16 (85794622-85794335) | |
| 145-432, gnl|monDom2|scaffold_29 (6372912-6372613) | |
| 145-432, gnl|oryCun1|scaffold_199053 (54980-54681) | |
| 145-432, gnl|panTro1|chr22 (27130213-27130512) | |
| 145-432, gnl|rheMac2|chr3 (19826753-19826454) | |
| 145-432, gnl|rn3|chr11 (25438397-25438696) | |
| 145-432, gnl|tetNig1|chr3 (5876376-5876081) | |
| 145-432, gnl|xenTro1|scaffold_114 (1251114-1251413) | |
| 443-608, gnl|bosTau2|chr29 (28913191-28913356) | |
| 443-608, gnl|Hg17|chr11 (129786695-129786530) | |
| 443-608, gnl|Mm7|chr9 (30856064-30856229) | |
| 619-800, gnl|bosTau2|chr1 (5837201-5837020) | |
| 619-800, gnl|Hg17|chr21 (27133953-27133772) | |
| 619-800, gnl|Mm7|chr16 (85793819-85793638) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 145-432, gnl|bosTau2|chr1 (5837987-5837700) | |
| 145-432, gnl|canFam2|chr31 (25191451-25191750) | |
| 145-432, gnl|danRer3|chrUn (105092300-105092603) | |
| 145-432, gnl|dasNov1|scaffold_19811 (8355-8056) | |
| 145-432, gnl|echTel1|scaffold_280254 (94253-94552) | |
| 145-432, gnl|fr1|chrUn (258000629-258000923) | |
| 145-432, gnl|galGal2|chr1 (96804165-96804457) | |
| 145-432, gnl|hg17|chr21 (27134449-27134748) | |
| 145-432, gnl|Hg17|chr21 (27134753-27134466) | |
| 145-432, gnl|loxAfr1|scaffold_2276 (58643-58942) | |
| 145-432, gnl|mm7|chr16 (85794318-85794617) | |
| 145-432, gnl|Mm7|chr16 (85794622-85794335) | |
| 145-432, gnl|monDom2|scaffold_29 (6372912-6372613) | |
| 145-432, gnl|oryCun1|scaffold_199053 (54980-54681) | |
| 145-432, gnl|panTro1|chr22 (27130213-27130512) | |
| 145-432, gnl|rheMac2|chr3 (19826753-19826454) | |
| 145-432, gnl|rn3|chr11 (25438397-25438696) | |
| 145-432, gnl|tetNig1|chr3 (5876376-5876081) | |
| 145-432, gnl|xenTro1|scaffold_114 (1251114-1251413) | |
| 443-608, gnl|bosTau2|chr29 (28913191-28913356) | |
| 443-608, gnl|Hg17|chr11 (129786695-129786530) | |
| 443-608, gnl|Mm7|chr9 (30856064-30856229) | |
| 619-800, gnl|bosTau2|chr1 (5837201-5837020) | |
| 619-800, gnl|Hg17|chr21 (27133953-27133772) | |
| 619-800, gnl|Mm7|chr16 (85793819-85793638) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.245128) | |
| eru (0.120048) |