Ss1.1-reep12c_p1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCAAGGGAGATCCAGGCCCTCCTGGTATTCCTGGGAGAAATGGAGACCCTGGTCTTCCA GGACAACCAGGTTCCCCTGGTTCTCCTGGGCCTCCTGGAATCTGTGAATCATGCCCTACT GGTGGCCAGAACTATTCTCCCCAGTATGAGTCATATGATGTCAAGGCTGGAGTAGCAGGA GGAGGAATCGGAGGCTATCCTGGGCCAGCAGGTCCCCCTGGCCCACCTGGTCCCCCTGGT GTATCTGGTCATCCTGGTGCCCCTGGTTCTCCAGGATACCAAGGGCCCCCTGGTGAACCT GGGCAAGCTGGTCCTGCAGGTCCTCCAGGGCCTCCTGGTGCTATAGGTCCATCTGGTCCT GCCGGAAAAGATGGGGAGTCAGGAAGACCCGGACGACCTGGAGAACGAGGATTGCCTGGC CCTCCAGGTCTCAAAGGTCCAGCTGGCATGCCTGGATTCCCTGGTATGAAAGGGCATAGA GGCTTTGATGGACGAAATGGAGAAAAAGGTGATACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCAAGGGAGATCCAGGCCCTCCTGGTATTCCTGGGAGAAATGGAGACCCTGGTCTTCCA GGACAACCAGGTTCCCCTGGTTCTCCTGGGCCTCCTGGAATCTGTGAATCATGCCCTACT GGTGGCCAGAACTATTCTCCCCAGTATGAGTCATATGATGTCAAGGCTGGAGTAGCAGGA GGAGGAATCGGAGGCTATCCTGGGCCAGCAGGTCCCCCTGGCCCACCTGGTCCCCCTGGT GTATCTGGTCATCCTGGTGCCCCTGGTTCTCCAGGATACCAAGGGCCCCCTGGTGAACCT GGGCAAGCTGGTCCTGCAGGTCCTCCAGGGCCTCCTGGTGCTATAGGTCCATCTGGTCCT GCCGGAAAAGATGGGGAGTCAGGAAGACCCGGACGACCTGGAGAACGAGGATTGCCTGGC CCTCCAGGTCTCAAAGGTCCAGCTGGCATGCCTGGATTCCCTGGTATGAAAGGGCATAGA GGCTTTGATGGACGAAATGGAGAAAAAGGTGATACA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 16-129, - strand, RNAz p=0.998979 | |
| 17-129, - strand, RNAz p=0.991604 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 16-129, - strand, RNAz p=0.998979 | |
| 17-129, - strand, RNAz p=0.991604 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 16-123, BP374999 Sugano cDNA library, umbilical cord Homo sapiens cDNA (dbj|BP374999.1|), blast E-value=4.00001e-41, identity=95.37% | |
| 16-123, DB257147 UTERU2 Homo sapiens cDNA clone UTERU2013198 5', mRNA (dbj|DB257147.1|), blast E-value=4.00001e-41, identity=95.37% | |
| 16-123, DB461809 RIKEN full-length enriched human cDNA library, testis Homo (dbj|DB461809.1|), blast E-value=4.00001e-41, identity=95.37% | |
| 16-123, 17000532203149 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb|CN367493.1|), blast E-value=2.00386e-43, identity=96.3% | |
| 16-119, PADT0811015_L22R porcine adipose tissue cDNA library (PADT) Sus (gb|EB417629.1|), blast E-value=0, identity=100% | |
| 16-123, 300813 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', (gb|EB526449.1|), blast E-value=4.00001e-41, identity=95.37% | |
| 17-123, BP374999 Sugano cDNA library, umbilical cord Homo sapiens cDNA (dbj|BP374999.1|), blast E-value=2e-40, identity=95.33% | |
| 17-123, DB257147 UTERU2 Homo sapiens cDNA clone UTERU2013198 5', mRNA (dbj|DB257147.1|), blast E-value=2e-40, identity=95.33% | |
| 17-123, DB461809 RIKEN full-length enriched human cDNA library, testis Homo (dbj|DB461809.1|), blast E-value=2e-40, identity=95.33% | |
| 17-123, 17000532203149 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb|CN367493.1|), blast E-value=7.00649e-43, identity=96.26% | |
| 17-119, PADT0811015_L22R porcine adipose tissue cDNA library (PADT) Sus (gb|EB417629.1|), blast E-value=0, identity=100% | |
| 17-123, 300813 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', (gb|EB526449.1|), blast E-value=2e-40, identity=95.33% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 16-123, BP374999 Sugano cDNA library, umbilical cord Homo sapiens cDNA (dbj|BP374999.1|), blast E-value=4.00001e-41, identity=95.37% | |
| 16-123, DB257147 UTERU2 Homo sapiens cDNA clone UTERU2013198 5', mRNA (dbj|DB257147.1|), blast E-value=4.00001e-41, identity=95.37% | |
| 16-123, DB461809 RIKEN full-length enriched human cDNA library, testis Homo (dbj|DB461809.1|), blast E-value=4.00001e-41, identity=95.37% | |
| 16-123, 17000532203149 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb|CN367493.1|), blast E-value=2.00386e-43, identity=96.3% | |
| 16-119, PADT0811015_L22R porcine adipose tissue cDNA library (PADT) Sus (gb|EB417629.1|), blast E-value=0, identity=100% | |
| 16-123, 300813 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', (gb|EB526449.1|), blast E-value=4.00001e-41, identity=95.37% | |
| 17-123, BP374999 Sugano cDNA library, umbilical cord Homo sapiens cDNA (dbj|BP374999.1|), blast E-value=2e-40, identity=95.33% | |
| 17-123, DB257147 UTERU2 Homo sapiens cDNA clone UTERU2013198 5', mRNA (dbj|DB257147.1|), blast E-value=2e-40, identity=95.33% | |
| 17-123, DB461809 RIKEN full-length enriched human cDNA library, testis Homo (dbj|DB461809.1|), blast E-value=2e-40, identity=95.33% | |
| 17-123, 17000532203149 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb|CN367493.1|), blast E-value=7.00649e-43, identity=96.26% | |
| 17-119, PADT0811015_L22R porcine adipose tissue cDNA library (PADT) Sus (gb|EB417629.1|), blast E-value=0, identity=100% | |
| 17-123, 300813 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', (gb|EB526449.1|), blast E-value=2e-40, identity=95.33% |
| Aligned organism(s): 18 entry(ies) | More info |
| Aligned organism(s): 18 entry(ies) | Help | Less info |
| 16-129, gnl|bosTau2|chr2 (3145872-3145759) | |
| 16-129, gnl|canFam2|chr36 (33528790-33528924) | |
| 16-129, gnl|danRer3|chrUn (140996712-140996581) | |
| 16-129, gnl|echTel1|scaffold_316050 (135965-135861) | |
| 16-129, gnl|fr1|chrUn (208435300-208435180) | |
| 16-129, gnl|galGal2|chr7 (573710-573583) | |
| 16-129, gnl|hg17|chr2 (189675870-189676000) | |
| 16-129, gnl|Hg17|chr2 (189675897-189676010) | |
| 16-129, gnl|loxAfr1|scaffold_5998 (49133-49015) | |
| 16-129, gnl|mm7|chr1 (45558970-45559161) | |
| 16-129, gnl|Mm7|chr1 (45559068-45559171) | |
| 16-129, gnl|monDom2|scaffold_2 (94268321-94268453) | |
| 16-129, gnl|oryCun1|scaffold_199521 (259958-259824) | |
| 16-129, gnl|panTro1|chr13 (79547217-79547348) | |
| 16-129, gnl|rheMac2|chr12 (52627023-52627154) | |
| 16-129, gnl|rn3|chr9 (44293362-44293493) | |
| 16-129, gnl|tetNig1|chr9 (7665393-7665492) | |
| 16-129, gnl|xenTro1|scaffold_48 (596609-596717) |
| Aligned organism(s): 18 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 16-129, gnl|bosTau2|chr2 (3145872-3145759) | |
| 16-129, gnl|canFam2|chr36 (33528790-33528924) | |
| 16-129, gnl|danRer3|chrUn (140996712-140996581) | |
| 16-129, gnl|echTel1|scaffold_316050 (135965-135861) | |
| 16-129, gnl|fr1|chrUn (208435300-208435180) | |
| 16-129, gnl|galGal2|chr7 (573710-573583) | |
| 16-129, gnl|hg17|chr2 (189675870-189676000) | |
| 16-129, gnl|Hg17|chr2 (189675897-189676010) | |
| 16-129, gnl|loxAfr1|scaffold_5998 (49133-49015) | |
| 16-129, gnl|mm7|chr1 (45558970-45559161) | |
| 16-129, gnl|Mm7|chr1 (45559068-45559171) | |
| 16-129, gnl|monDom2|scaffold_2 (94268321-94268453) | |
| 16-129, gnl|oryCun1|scaffold_199521 (259958-259824) | |
| 16-129, gnl|panTro1|chr13 (79547217-79547348) | |
| 16-129, gnl|rheMac2|chr12 (52627023-52627154) | |
| 16-129, gnl|rn3|chr9 (44293362-44293493) | |
| 16-129, gnl|tetNig1|chr9 (7665393-7665492) | |
| 16-129, gnl|xenTro1|scaffold_48 (596609-596717) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |