Non-Coding RNA Search

Ss1.1-reep12c_p17.5

Sequence:


               
               TGTGAGAAGAGCTTTGTCCAGAAGCAGCACCTCCTGCAGCACCAGAAGTCCACCAGCGGG
AGCGGGGTGGGCCGGCCCTGGAGCCGGGAAGGCCCAATGGCCAGCTTTAGAAGTGCCAGC
CCCTCGCCCGGCTGGGGGGGGCGGAGGGGGCTGGCACTGTCCCCCCAAAGAGACACTGCA
GAGTCAGGGACTGATGCTTCCTGAGGAGAGTCGCTCTGACTTCTTCCCCGTGACCAGGCG
TCAGGCCAAGCCCCTAGGGCTCTCCTGCTATGTCTTTTCACCCTGCTGCCAAGTTGCCAT
CTCTTTGGCACCTCGAGTGTCTGGTTTCCCATCTGAGCTGATGGTTCTGGGCCAGGGTTG
GCTCCTTGAGCCCGCAGGCTGGTGCCCAGTTCCAGGGCCTGTCCGGCTCTCGGGTCTTCC
AGGGGTGGAGTCGGGCTGGAAGAGTGAGCTGGGCGGGGAAGAGCCTTGGGGGCAGAGCCC
ACGTCCTCTTCCTTTGTAGTCTCTCTGTTAATAACAAGTGAAGGAATAATTTAAATGAAC
TGCTCACCCTGCTCTAAAGAACCTTTTTTCAAATTAGATTTTAGTTGATTTAAACAAAAG
TCTGATACTTTAAAATTTTTCCAAGGTTATAGCAGTTGCTCCTAACGTGGGGACCGGGCC
TGCCCTCTAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGAGAAGAGCTTTGTCCAGAAGCAGCACCTCCTGCAGCACCAGAAGTCCACCAGCGGG
AGCGGGGTGGGCCGGCCCTGGAGCCGGGAAGGCCCAATGGCCAGCTTTAGAAGTGCCAGC
CCCTCGCCCGGCTGGGGGGGGCGGAGGGGGCTGGCACTGTCCCCCCAAAGAGACACTGCA
GAGTCAGGGACTGATGCTTCCTGAGGAGAGTCGCTCTGACTTCTTCCCCGTGACCAGGCG
TCAGGCCAAGCCCCTAGGGCTCTCCTGCTATGTCTTTTCACCCTGCTGCCAAGTTGCCAT
CTCTTTGGCACCTCGAGTGTCTGGTTTCCCATCTGAGCTGATGGTTCTGGGCCAGGGTTG
GCTCCTTGAGCCCGCAGGCTGGTGCCCAGTTCCAGGGCCTGTCCGGCTCTCGGGTCTTCC
AGGGGTGGAGTCGGGCTGGAAGAGTGAGCTGGGCGGGGAAGAGCCTTGGGGGCAGAGCCC
ACGTCCTCTTCCTTTGTAGTCTCTCTGTTAATAACAAGTGAAGGAATAATTTAAATGAAC
TGCTCACCCTGCTCTAAAGAACCTTTTTTCAAATTAGATTTTAGTTGATTTAAACAAAAG
TCTGATACTTTAAAATTTTTCCAAGGTTATAGCAGTTGCTCCTAACGTGGGGACCGGGCC
TGCCCTCTAGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-194, + strand, RNAz p=0.903539

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-194, + strand, RNAz p=0.903539

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               106-203, - strand, RNAmicro p=0.999838
               

               
               66-161, + strand, RNAmicro p=0.980696

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               106-203, - strand, RNAmicro p=0.999838
               

               
               66-161, + strand, RNAmicro p=0.980696

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_012256, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_012256, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-672, gnl|bosTau2|chr4 (65402149-65402803)
               

               
               1-672, gnl|Hg17|chr7 (148389044-148389761)
               

               
               1-672, gnl|Mm7|chr6 (47890553-47891234)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-672, gnl|bosTau2|chr4 (65402149-65402803)
               

               
               1-672, gnl|Hg17|chr7 (148389044-148389761)
               

               
               1-672, gnl|Mm7|chr6 (47890553-47891234)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ton (0.1755)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

	106-203, - strand, RNAmicro p=0.999838
	66-161, + strand, RNAmicro p=0.980696

	1-672, gnl\|bosTau2\|chr4 (65402149-65402803)
	1-672, gnl\|Hg17\|chr7 (148389044-148389761)
	1-672, gnl\|Mm7\|chr6 (47890553-47891234)