Ss1.1-reep13c_h14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGAAGTGTAGGCGAGCGTTCCCGGTTGGTTTGTGGGGTCCCGGGCTTGCCCGAGGTCTG ACGCTGCAGCCATGGCGGCCTCCACCGCGGCCGGGAAGCAGAGGATCCCGAAAGTGGCCA AGGTGAAAAACAAAGCCCCAGCTGAGGTACAGATAACTGCAGAACAACTGCTAAGAGAAG CTAAGGAAAGAGAACTTGAGCTTCTTCCACCTCCCCCTCAACAGAAGATCACAGATGAAG AGGAGTTAAATGATTACAAACTAAGGAAGAGGAAGACTTTTGAAGATAACATAAGGAAAA ACAGGACTGTAATTAGTAACTGGATAAAATATGCACAATGGGAAGAAAGTCTAAAGGAGA TTCAAAGGGCTCGGTCCATATACGAACGTGCTTTAGACGTGGACTATCGGAATATCACAC TCTGGCTGAAATATGCAGAGATGGAAATGAAGAATCGCCAGGTCAACCATGCCCGGAATA TCTGGGACCGGGCCATAACAACTCTGCCTCGAGTCAACCAGTTCTGGTACAAGTACACAT ACATGGAGGAGATGTTGGGGAACATTGCCGGGGCCCGGCAGGTGTTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGAAGTGTAGGCGAGCGTTCCCGGTTGGTTTGTGGGGTCCCGGGCTTGCCCGAGGTCTG ACGCTGCAGCCATGGCGGCCTCCACCGCGGCCGGGAAGCAGAGGATCCCGAAAGTGGCCA AGGTGAAAAACAAAGCCCCAGCTGAGGTACAGATAACTGCAGAACAACTGCTAAGAGAAG CTAAGGAAAGAGAACTTGAGCTTCTTCCACCTCCCCCTCAACAGAAGATCACAGATGAAG AGGAGTTAAATGATTACAAACTAAGGAAGAGGAAGACTTTTGAAGATAACATAAGGAAAA ACAGGACTGTAATTAGTAACTGGATAAAATATGCACAATGGGAAGAAAGTCTAAAGGAGA TTCAAAGGGCTCGGTCCATATACGAACGTGCTTTAGACGTGGACTATCGGAATATCACAC TCTGGCTGAAATATGCAGAGATGGAAATGAAGAATCGCCAGGTCAACCATGCCCGGAATA TCTGGGACCGGGCCATAACAACTCTGCCTCGAGTCAACCAGTTCTGGTACAAGTACACAT ACATGGAGGAGATGTTGGGGAACATTGCCGGGGCCCGGCAGGTGTTCG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 120-238, + strand, RNAz p=0.606631 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 120-238, + strand, RNAz p=0.606631 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AF318304, + |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 120-275, gnl|bosTau2|chr13 (26816752-26816907) | |
| 120-275, gnl|canFam2|chr24 (6296441-6296269) | |
| 120-275, gnl|danRer3|chrNA (38503286-38503457) | |
| 120-275, gnl|dasNov1|scaffold_19676 (12364-12536) | |
| 120-275, gnl|echTel1|scaffold_278937 (45009-45181) | |
| 120-275, gnl|fr1|chrUn (67001948-67001789) | |
| 120-275, gnl|galGal2|chr3 (3792148-3791990) | |
| 120-275, gnl|hg17|chr20 (19979097-19979269) | |
| 120-275, gnl|Hg17|chr20 (19979269-19979114) | |
| 120-275, gnl|loxAfr1|scaffold_3914 (26497-26670) | |
| 120-275, gnl|mm7|chr2 (145673661-145673825) | |
| 120-275, gnl|Mm7|chr2 (145673825-145673670) | |
| 120-275, gnl|monDom2|scaffold_1 (55205438-55205603) | |
| 120-275, gnl|oryCun1|scaffold_174752 (3810-3644) | |
| 120-275, gnl|panTro1|chr21 (19900816-19900988) | |
| 120-275, gnl|rheMac2|chr10 (53362286-53362458) | |
| 120-275, gnl|rn3|chr3 (134458582-134458733) | |
| 120-275, gnl|tetNig1|chr14 (9477046-9477210) | |
| 120-275, gnl|xenTro1|scaffold_352 (1134061-1133900) | |
| 365-529, gnl|bosTau2|chr13 (26818612-26818776) | |
| 365-529, gnl|canFam2|chr24 (6298965-6298862) | |
| 365-529, gnl|danRer3|chrNA (38500256-38500359) | |
| 365-529, gnl|dasNov1|scaffold_19676 (10700-10802) | |
| 365-529, gnl|echTel1|scaffold_278937 (43270-43373) | |
| 365-529, gnl|fr1|chrUn (67002396-67002293) | |
| 365-529, gnl|galGal2|chr3 (3793985-3793882) | |
| 365-529, gnl|hg17|chr20 (19976983-19977086) | |
| 365-529, gnl|Hg17|chr20 (19977148-19976984) | |
| 365-529, gnl|loxAfr1|scaffold_3914 (24477-24580) | |
| 365-529, gnl|mm7|chr2 (145672123-145672226) | |
| 365-529, gnl|Mm7|chr2 (145672288-145672124) | |
| 365-529, gnl|monDom2|scaffold_1 (55203872-55203975) | |
| 365-529, gnl|oryCun1|scaffold_174752 (5891-5788) | |
| 365-529, gnl|panTro1|chr21 (19898729-19898832) | |
| 365-529, gnl|rheMac2|chr10 (53360202-53360305) | |
| 365-529, gnl|rn3|chr3 (134457038-134457141) | |
| 365-529, gnl|tetNig1|chr14 (9476574-9476675) | |
| 365-529, gnl|xenTro1|scaffold_352 (1134846-1134775) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 120-275, gnl|bosTau2|chr13 (26816752-26816907) | |
| 120-275, gnl|canFam2|chr24 (6296441-6296269) | |
| 120-275, gnl|danRer3|chrNA (38503286-38503457) | |
| 120-275, gnl|dasNov1|scaffold_19676 (12364-12536) | |
| 120-275, gnl|echTel1|scaffold_278937 (45009-45181) | |
| 120-275, gnl|fr1|chrUn (67001948-67001789) | |
| 120-275, gnl|galGal2|chr3 (3792148-3791990) | |
| 120-275, gnl|hg17|chr20 (19979097-19979269) | |
| 120-275, gnl|Hg17|chr20 (19979269-19979114) | |
| 120-275, gnl|loxAfr1|scaffold_3914 (26497-26670) | |
| 120-275, gnl|mm7|chr2 (145673661-145673825) | |
| 120-275, gnl|Mm7|chr2 (145673825-145673670) | |
| 120-275, gnl|monDom2|scaffold_1 (55205438-55205603) | |
| 120-275, gnl|oryCun1|scaffold_174752 (3810-3644) | |
| 120-275, gnl|panTro1|chr21 (19900816-19900988) | |
| 120-275, gnl|rheMac2|chr10 (53362286-53362458) | |
| 120-275, gnl|rn3|chr3 (134458582-134458733) | |
| 120-275, gnl|tetNig1|chr14 (9477046-9477210) | |
| 120-275, gnl|xenTro1|scaffold_352 (1134061-1133900) | |
| 365-529, gnl|bosTau2|chr13 (26818612-26818776) | |
| 365-529, gnl|canFam2|chr24 (6298965-6298862) | |
| 365-529, gnl|danRer3|chrNA (38500256-38500359) | |
| 365-529, gnl|dasNov1|scaffold_19676 (10700-10802) | |
| 365-529, gnl|echTel1|scaffold_278937 (43270-43373) | |
| 365-529, gnl|fr1|chrUn (67002396-67002293) | |
| 365-529, gnl|galGal2|chr3 (3793985-3793882) | |
| 365-529, gnl|hg17|chr20 (19976983-19977086) | |
| 365-529, gnl|Hg17|chr20 (19977148-19976984) | |
| 365-529, gnl|loxAfr1|scaffold_3914 (24477-24580) | |
| 365-529, gnl|mm7|chr2 (145672123-145672226) | |
| 365-529, gnl|Mm7|chr2 (145672288-145672124) | |
| 365-529, gnl|monDom2|scaffold_1 (55203872-55203975) | |
| 365-529, gnl|oryCun1|scaffold_174752 (5891-5788) | |
| 365-529, gnl|panTro1|chr21 (19898729-19898832) | |
| 365-529, gnl|rheMac2|chr10 (53360202-53360305) | |
| 365-529, gnl|rn3|chr3 (134457038-134457141) | |
| 365-529, gnl|tetNig1|chr14 (9476574-9476675) | |
| 365-529, gnl|xenTro1|scaffold_352 (1134846-1134775) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |