Non-Coding RNA Search

Ss1.1-reep13c_i8.5.5

Sequence:


               
               CAAGGATTCGCCGCCCCCGCCCCACCCCCATTTAAAAAGCAGGTGCCGGCTTCCCTTTCG
GATACGTTTTTGATCAGCTCTGCATCTTTTGTTTTTAAGGAGAGAAAAGAGAAAAAAGGC
GTTTTATGCGTTGCCCCTTCCACACGTGCTGAGATGAAAATGCAGGCTTAAATGAATGTT
AATTGCTGCCTTTTTCCAATCGTCTTCTCACAGTGCCTGATGGGAGGAGGACCAGGGCAG
GGAAATCACCTTTCTGTAGATGAGAATCAAACGACACTTGGTGCTTCTATCGTAACACTC
CTCTTTCGTGGTGCTATCTGCTCGGATCTCCTGGAAGGCGACACTGGGGGTACCTGCCTG
CCTCATTCTCCCATCTTTCTGGATCCTGGCAATTGCTTCCACCACCTAGGTCTCTGCCAA
GGATGTTGAGATAATGCAGGCCACCTGCCCACCCCGCAGCCCCGCTCGCTGCTGTCCTCC
TGGGCGGTGGGGGAGACCCCCACCCCCGGGCCTGGTACCAGCGTTAGGCTGTGATTCTGT
GATTTGAAAACACACACACACGCACACACACACACACACACACACACAGACGCTTCCCAC
ATGGTCCATGGCATGACGACAGCAGATTGTATCCAGTGGCCGAATGTTTGTGGTGCTAAT
TTTTATGTTTGTTCAAAGAACTGAATCGAAGCTGCATGTGGTATCTCAGCGGGGCGGCCT
CCCTCGCGGCCTCAGCGGACAGACAAATGTGCAATGAACTCTGTGGGTCCCTCCGAGGTC
GCCCGCGGTGCCCACCCCCCACGAAAGCTATTCGGTCTTCCATCTGCTAGTGTCCCGGGC
TCAGGTCCCAGCCACGCGGGCAGGTGCTCAGGGCCGGCCGGGTCCCCTCCCTCCTCCCTG
AGCGAGGAGGAGAATAACGAGGCCGGCGAGAAAAGGCCATCCCTTTACTGTGAAAAGCTG
CCCTCGTGCAACACCCTCTCCTTCCGAGGTGGGAGAAGCCAGGCGGGGCCCGGGACCCCG
CGCAGCGCTCCCGGCAGGAGCTGTGGCCCGTCCCGGTTCTGGTGCTGCCCCGCCCACCCG
CCCCATCGGACTGTGGTTCCAGCTCAGGAAACCACAGCGCAGCCACCCAGGAGTGACAAC
ATGCACCCCCCCCCACGAGGACTCCCCGGGCACCCCTGGAGACGGAGGCTTGGTCTTGCC
AAAGAAAAGTCTGGCTTCGCGCTTCTTCCGAACCCAGGATGCCAGCATCTGCCGACGACG
CTCGTTCCCGCCTCTTCAAAAGCAAAGCCGTTCGGGGCGTGGCGGGGCGCGTCTAGGTCA
TGTGATTCCACTTTGATTTCTCACCCCGCCCGCGTCCTCCTTTCCGTCTGTGGATCTGCT
CCTCCTCTGGTCCCTGCAAAGCTGTTGTAATTTGTACTGAAGTCAAAATGTGTCCTGTTC
TCCCCCAGACCACTTAGCTATGGTATATTGCAATAAAATTACTTCTTATATTTGCAGAAA
TTCTTTTGGCGTCGTTTTGTTTGTTTCCCCCCATCTACATCATTGGATGCATGCTGACGA
AAAGAGGAAGGAAAGGGTTAGAAAAGAAAAGAAAAGAAAACGGATGGTAAGGTCTCCAGG
ACACATAGGCCCTTGAGAACAGGACGTCAAAGACGCCATTGTACGTTTCCTAAAAATCCA
ACAGACGTGTTCCGACGTTTTAACTGTAATGCCAGGAGAGGGTGTCTTAAAATATTTTAA
ACCTGTGTAACAGAGGAACAATTGTAATACTTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGATTCGCCGCCCCCGCCCCACCCCCATTTAAAAAGCAGGTGCCGGCTTCCCTTTCG
GATACGTTTTTGATCAGCTCTGCATCTTTTGTTTTTAAGGAGAGAAAAGAGAAAAAAGGC
GTTTTATGCGTTGCCCCTTCCACACGTGCTGAGATGAAAATGCAGGCTTAAATGAATGTT
AATTGCTGCCTTTTTCCAATCGTCTTCTCACAGTGCCTGATGGGAGGAGGACCAGGGCAG
GGAAATCACCTTTCTGTAGATGAGAATCAAACGACACTTGGTGCTTCTATCGTAACACTC
CTCTTTCGTGGTGCTATCTGCTCGGATCTCCTGGAAGGCGACACTGGGGGTACCTGCCTG
CCTCATTCTCCCATCTTTCTGGATCCTGGCAATTGCTTCCACCACCTAGGTCTCTGCCAA
GGATGTTGAGATAATGCAGGCCACCTGCCCACCCCGCAGCCCCGCTCGCTGCTGTCCTCC
TGGGCGGTGGGGGAGACCCCCACCCCCGGGCCTGGTACCAGCGTTAGGCTGTGATTCTGT
GATTTGAAAACACACACACACGCACACACACACACACACACACACACAGACGCTTCCCAC
ATGGTCCATGGCATGACGACAGCAGATTGTATCCAGTGGCCGAATGTTTGTGGTGCTAAT
TTTTATGTTTGTTCAAAGAACTGAATCGAAGCTGCATGTGGTATCTCAGCGGGGCGGCCT
CCCTCGCGGCCTCAGCGGACAGACAAATGTGCAATGAACTCTGTGGGTCCCTCCGAGGTC
GCCCGCGGTGCCCACCCCCCACGAAAGCTATTCGGTCTTCCATCTGCTAGTGTCCCGGGC
TCAGGTCCCAGCCACGCGGGCAGGTGCTCAGGGCCGGCCGGGTCCCCTCCCTCCTCCCTG
AGCGAGGAGGAGAATAACGAGGCCGGCGAGAAAAGGCCATCCCTTTACTGTGAAAAGCTG
CCCTCGTGCAACACCCTCTCCTTCCGAGGTGGGAGAAGCCAGGCGGGGCCCGGGACCCCG
CGCAGCGCTCCCGGCAGGAGCTGTGGCCCGTCCCGGTTCTGGTGCTGCCCCGCCCACCCG
CCCCATCGGACTGTGGTTCCAGCTCAGGAAACCACAGCGCAGCCACCCAGGAGTGACAAC
ATGCACCCCCCCCCACGAGGACTCCCCGGGCACCCCTGGAGACGGAGGCTTGGTCTTGCC
AAAGAAAAGTCTGGCTTCGCGCTTCTTCCGAACCCAGGATGCCAGCATCTGCCGACGACG
CTCGTTCCCGCCTCTTCAAAAGCAAAGCCGTTCGGGGCGTGGCGGGGCGCGTCTAGGTCA
TGTGATTCCACTTTGATTTCTCACCCCGCCCGCGTCCTCCTTTCCGTCTGTGGATCTGCT
CCTCCTCTGGTCCCTGCAAAGCTGTTGTAATTTGTACTGAAGTCAAAATGTGTCCTGTTC
TCCCCCAGACCACTTAGCTATGGTATATTGCAATAAAATTACTTCTTATATTTGCAGAAA
TTCTTTTGGCGTCGTTTTGTTTGTTTCCCCCCATCTACATCATTGGATGCATGCTGACGA
AAAGAGGAAGGAAAGGGTTAGAAAAGAAAAGAAAAGAAAACGGATGGTAAGGTCTCCAGG
ACACATAGGCCCTTGAGAACAGGACGTCAAAGACGCCATTGTACGTTTCCTAAAAATCCA
ACAGACGTGTTCCGACGTTTTAACTGTAATGCCAGGAGAGGGTGTCTTAAAATATTTTAA
ACCTGTGTAACAGAGGAACAATTGTAATACTTTTTC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               28-419, gnl|bosTau2|chr11 (86727193-86726801)
               

               
               28-419, gnl|Hg17|chr9 (134960890-134961308)
               

               
               28-419, gnl|Mm7|chr2 (28045058-28045457)
               


               
               506-1776, gnl|bosTau2|chr11 (86726751-86725489)
               

               
               506-1776, gnl|Hg17|chr9 (134961379-134962603)
               

               
               506-1776, gnl|Mm7|chr2 (28045537-28046793)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-419, gnl|bosTau2|chr11 (86727193-86726801)
               

               
               28-419, gnl|Hg17|chr9 (134960890-134961308)
               

               
               28-419, gnl|Mm7|chr2 (28045058-28045457)
               


               
               506-1776, gnl|bosTau2|chr11 (86726751-86725489)
               

               
               506-1776, gnl|Hg17|chr9 (134961379-134962603)
               

               
               506-1776, gnl|Mm7|chr2 (28045537-28046793)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               eru (1.56062)
               

               
               ese (1.51803)
               

               
               eep (0.857948)
               

               
               jca (0.797721)
               

               
               nep (0.551775)
               

               
               ton (0.526501)
               

               
               eye (0.511509)
               

               
               amn (0.417711)
               

               
               nca (0.410621)
               

               
               pla (0.267344)
               

               
               ute (0.265569)
               

               
               gul (0.177588)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (1.56062)
               

               
               ese (1.51803)
               

               
               eep (0.857948)
               

               
               jca (0.797721)
               

               
               nep (0.551775)
               

               
               ton (0.526501)
               

               
               eye (0.511509)
               

               
               amn (0.417711)
               

               
               nca (0.410621)
               

               
               pla (0.267344)
               

               
               ute (0.265569)
               

               
               gul (0.177588)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	28-419, gnl\|bosTau2\|chr11 (86727193-86726801)
	28-419, gnl\|Hg17\|chr9 (134960890-134961308)
	28-419, gnl\|Mm7\|chr2 (28045058-28045457)

	506-1776, gnl\|bosTau2\|chr11 (86726751-86725489)
	506-1776, gnl\|Hg17\|chr9 (134961379-134962603)
	506-1776, gnl\|Mm7\|chr2 (28045537-28046793)

	eru (1.56062)
	ese (1.51803)
	eep (0.857948)
	jca (0.797721)
	nep (0.551775)
	ton (0.526501)
	eye (0.511509)
	amn (0.417711)
	nca (0.410621)
	pla (0.267344)
	ute (0.265569)
	gul (0.177588)
	nco (0.161734)
	fco (0.157208)
	cag (0.151194)
	fat (0.147427)
	ski (0.146735)
	nmm (0.132802)
	bla (0.124347)
	cly (0.120642)
	med (0.116252)
	eje (0.0988338)