Ss1.1-reep13c_k10.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
ATGAGCTGACCCTGGCCAGAGCCGACCTGGAGATGCAGATCGAGAACCTCAAGGAGGAGC TGGCCTACCTCCGAAAGAACCACGAGGAGGAGATGAACGCCCTGCGAGGCCAGGTGGGCG GCGAGATCAACGTGGAGATGGACGCCGCCCCCGGCGTGGACCTGAGCCGCATCCTGAACG AGATGCGCGACCAGTACGAGAAGATGGCCGAGAAGAACCGCAAGGATGCCGAGGACTGGT TCTTCAGCAAGACGGAGGAGCTGAACCGCGAGGTGGCCACCAACAGCGAGCTGGTGCAGA GCGGCAAGAGCGAGATCTCCGAGCTCCGGCGCACCATGCAGGCGCTGGAGATCGAGCTGC AGTCCCAGCTCAGCATGAAAGCATCCTTGGAGGGTAGCCTGGCAGAGACAGAGAACCGCT ACTGCGTGCAGCTGTCCCAGATCCAGGGGCTGATCGGTGGCGTGGAGGAGCAGCTGGCGC AGCTGCGCTGCGAGATGGAGCAACAGAACCAGGAATACAAGATCCTGCTGGACGTGAAGA CGCGGCTGGAGCAGGAGATCGCCACCTACCGCCGCCTGCTGGAGGGCGAGGATGCCCACC TGACTCAGTACAAGCCCAAAGAACCCGTGACCACCCGCCAGGTGCGCACCATTGTGGAAG AGGTCCAGGACGGCAAGGTCATCTCCTCTCGCGAGC |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
ATGAGCTGACCCTGGCCAGAGCCGACCTGGAGATGCAGATCGAGAACCTCAAGGAGGAGC TGGCCTACCTCCGAAAGAACCACGAGGAGGAGATGAACGCCCTGCGAGGCCAGGTGGGCG GCGAGATCAACGTGGAGATGGACGCCGCCCCCGGCGTGGACCTGAGCCGCATCCTGAACG AGATGCGCGACCAGTACGAGAAGATGGCCGAGAAGAACCGCAAGGATGCCGAGGACTGGT TCTTCAGCAAGACGGAGGAGCTGAACCGCGAGGTGGCCACCAACAGCGAGCTGGTGCAGA GCGGCAAGAGCGAGATCTCCGAGCTCCGGCGCACCATGCAGGCGCTGGAGATCGAGCTGC AGTCCCAGCTCAGCATGAAAGCATCCTTGGAGGGTAGCCTGGCAGAGACAGAGAACCGCT ACTGCGTGCAGCTGTCCCAGATCCAGGGGCTGATCGGTGGCGTGGAGGAGCAGCTGGCGC AGCTGCGCTGCGAGATGGAGCAACAGAACCAGGAATACAAGATCCTGCTGGACGTGAAGA CGCGGCTGGAGCAGGAGATCGCCACCTACCGCCGCCTGCTGGAGGGCGAGGATGCCCACC TGACTCAGTACAAGCCCAAAGAACCCGTGACCACCCGCCAGGTGCGCACCATTGTGGAAG AGGTCCAGGACGGCAAGGTCATCTCCTCTCGCGAGC |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
478-592, + strand, RNAz p=0.578766 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
478-592, + strand, RNAz p=0.578766 |
Aligned organism(s): 28 entry(ies) | More info |
Aligned organism(s): 28 entry(ies) | Help | Less info |
3-332, gnl|bosTau2|chr8 (32205507-32205839) | |
3-332, gnl|Hg17|chr8 (24869346-24869017) | |
3-332, gnl|Mm7|chr14 (62943241-62943573) | |
88-242, gnl|bosTau2|chr19 (33832418-33832572) | |
88-242, gnl|Hg17|chr17 (36207061-36206907) | |
88-242, gnl|Mm7|chr11 (99480519-99480365) | |
370-592, gnl|bosTau2|chr19 (33589462-33589683) | |
370-592, gnl|canFam2|chr9 (25043319-25043073) | |
370-592, gnl|danRer3|chr19 (1233618-1233851) | |
370-592, gnl|dasNov1|scaffold_4155 (3265-3513) | |
370-592, gnl|echTel1|scaffold_158520 (2184-2403) | |
370-592, gnl|fr1|chrUn (253380798-253380561) | |
370-592, gnl|galGal2|chr27_random (592256-592025) | |
370-592, gnl|hg17|chr17 (36388571-36388816) | |
370-592, gnl|Hg17|chr17 (36388809-36388588) | |
370-592, gnl|loxAfr1|scaffold_72845 (29391-29643) | |
370-592, gnl|mm7|chr11 (99647579-99647825) | |
370-592, gnl|Mm7|chr11 (99647817-99647596) | |
370-592, gnl|monDom2|scaffold_18 (50580761-50581002) | |
370-592, gnl|oryCun1|scaffold_206837 (110509-110755) | |
370-592, gnl|panTro1|chr19 (39638740-39638985) | |
370-592, gnl|rheMac2|chr16 (51095515-51095760) | |
370-592, gnl|rn3|chr10 (88498548-88498794) | |
370-592, gnl|tetNig1|chr18 (5132907-5133137) | |
370-592, gnl|xenTro1|scaffold_394 (449456-449703) | |
383-591, gnl|bosTau2|chr19 (33774138-33774346) | |
383-591, gnl|Hg17|chr17 (36273116-36272908) | |
383-591, gnl|Mm7|chr11 (99527169-99526961) |
Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
3-332, gnl|bosTau2|chr8 (32205507-32205839) | |
3-332, gnl|Hg17|chr8 (24869346-24869017) | |
3-332, gnl|Mm7|chr14 (62943241-62943573) | |
88-242, gnl|bosTau2|chr19 (33832418-33832572) | |
88-242, gnl|Hg17|chr17 (36207061-36206907) | |
88-242, gnl|Mm7|chr11 (99480519-99480365) | |
370-592, gnl|bosTau2|chr19 (33589462-33589683) | |
370-592, gnl|canFam2|chr9 (25043319-25043073) | |
370-592, gnl|danRer3|chr19 (1233618-1233851) | |
370-592, gnl|dasNov1|scaffold_4155 (3265-3513) | |
370-592, gnl|echTel1|scaffold_158520 (2184-2403) | |
370-592, gnl|fr1|chrUn (253380798-253380561) | |
370-592, gnl|galGal2|chr27_random (592256-592025) | |
370-592, gnl|hg17|chr17 (36388571-36388816) | |
370-592, gnl|Hg17|chr17 (36388809-36388588) | |
370-592, gnl|loxAfr1|scaffold_72845 (29391-29643) | |
370-592, gnl|mm7|chr11 (99647579-99647825) | |
370-592, gnl|Mm7|chr11 (99647817-99647596) | |
370-592, gnl|monDom2|scaffold_18 (50580761-50581002) | |
370-592, gnl|oryCun1|scaffold_206837 (110509-110755) | |
370-592, gnl|panTro1|chr19 (39638740-39638985) | |
370-592, gnl|rheMac2|chr16 (51095515-51095760) | |
370-592, gnl|rn3|chr10 (88498548-88498794) | |
370-592, gnl|tetNig1|chr18 (5132907-5133137) | |
370-592, gnl|xenTro1|scaffold_394 (449456-449703) | |
383-591, gnl|bosTau2|chr19 (33774138-33774346) | |
383-591, gnl|Hg17|chr17 (36273116-36272908) | |
383-591, gnl|Mm7|chr11 (99527169-99526961) |
Expressed library(ies): 4 entry(ies) | More info |
Expressed library(ies): 4 entry(ies) | Help | Less info |
eep (0.61282) | |
pla (0.267344) | |
ton (0.1755) | |
pty (0.142714) |
Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
eep (0.61282) | |
pla (0.267344) | |
ton (0.1755) | |
pty (0.142714) |