Non-Coding RNA Search

Ss1.1-reep13c_p17.5

Sequence:


               
               CTCGCTGCAACGCGGTGGGAGAGGTGAAGGACTATGAGCCACCCTTTGGTTCCAAGGTGC
GGGAGCATCCCTGTGTTGAAAGCATGAAGGACAACGTGTTGAGAGACCGAGGACGGCCAG
AAATTCCTAGCTCCTGGCTCAACCACCAGGGCATCCAGACAGTGTGTGAGACACTGGCCG
AGTGCTGGGACCATGACCCCGAGGCCCGGCTCACTGCGCAGTGCGTGGCAGAGCGCTTCA
GCGAGCTGGAGCATCTGGACAGACTCTCGGGGAGGAGCAGCTCGGAAGAGAAGATTCCTG
AACATGGCTCCCTGAACACTACCAAATAGCTCTGCCAGGCGGCCAGGCTGGGCTGAGTCC
ATGGAGGCCGCCCCTGTGGCCAAAGAACAGAGGCAGCAGGAAGCTGCCCCTGAAGGATGC
TTCCTGGAACCCCAGGGGTCGTTCCCCTGCTGTGAGCAGGGTGGGTGGGAAGGGGTGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGCTGCAACGCGGTGGGAGAGGTGAAGGACTATGAGCCACCCTTTGGTTCCAAGGTGC
GGGAGCATCCCTGTGTTGAAAGCATGAAGGACAACGTGTTGAGAGACCGAGGACGGCCAG
AAATTCCTAGCTCCTGGCTCAACCACCAGGGCATCCAGACAGTGTGTGAGACACTGGCCG
AGTGCTGGGACCATGACCCCGAGGCCCGGCTCACTGCGCAGTGCGTGGCAGAGCGCTTCA
GCGAGCTGGAGCATCTGGACAGACTCTCGGGGAGGAGCAGCTCGGAAGAGAAGATTCCTG
AACATGGCTCCCTGAACACTACCAAATAGCTCTGCCAGGCGGCCAGGCTGGGCTGAGTCC
ATGGAGGCCGCCCCTGTGGCCAAAGAACAGAGGCAGCAGGAAGCTGCCCCTGAAGGATGC
TTCCTGGAACCCCAGGGGTCGTTCCCCTGCTGTGAGCAGGGTGGGTGGGAAGGGGTGACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|29122665|dbj|BAC66065.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29122665|dbj|BAC66065.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               173-472, + strand, RNAz p=0.996148

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               173-472, + strand, RNAz p=0.996148

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003242, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003242, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               138-472, gnl|bosTau2|chr22 (3292097-3291776)
               

               
               138-472, gnl|Hg17|chr3 (30707904-30708272)
               

               
               138-472, gnl|Mm7|chr9 (115762901-115762498)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-472, gnl|bosTau2|chr22 (3292097-3291776)
               

               
               138-472, gnl|Hg17|chr3 (30707904-30708272)
               

               
               138-472, gnl|Mm7|chr9 (115762901-115762498)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	138-472, gnl\|bosTau2\|chr22 (3292097-3291776)
	138-472, gnl\|Hg17\|chr3 (30707904-30708272)
	138-472, gnl\|Mm7\|chr9 (115762901-115762498)