Non-Coding RNA Search

Ss1.1-reep14c_d5.5

Sequence:


               
               AAAATATTTGCAGAACAGTAAACATGGGGGATGAGGGCTACAAGTCAGTCAGTCCAGTCA
GTCGTCTCCCAGCTCTGTCCTGAGTTGAGGGGGTAATTGGAGTCCTGTGCTTTGCGTTAT
CACTTCAACGTGGTTTAGGAATGTACTAGTCAGAGGATGCCAGTGACTTTGAGGAGTGTG
TCAGAGGATACTCAGTGCAGGGTAGTCAAGATGTTATTTGAGTTCTTCAGTAATTGCCTT
AAAGCCATCTGTGTGAGCCAGGCCCCAGGCAGGGCAGCTCTGCAGGGGTCTCTGTGTGGT
GAAAGGAGATGAACCTTTGCTCAGGAAGCCTTCGGAAGGGGCCTTTCTGGCAGCTGTTTG
CCTGCCCTACAGACAGGTGAGAATTAGTTTAAACTGGATACTACTCAGCATGTTTTAAAA
TGTTTCCACTACATTGAGGTAAACTTTTTTAAAGTGGGCTACAAATAGCATTTTGCTGTA
GTTTTGCTCATTTCTACTTTTTTTTTCCTATTTCTTTAGTGATCAGAAGTTTATTGACAA
ATATTTGTGTAAACTCACTCAAGTCCATAACCCTTCCAATATCTGTGCCCCTGTTCTCAG
TTCCTCAGGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATATTTGCAGAACAGTAAACATGGGGGATGAGGGCTACAAGTCAGTCAGTCCAGTCA
GTCGTCTCCCAGCTCTGTCCTGAGTTGAGGGGGTAATTGGAGTCCTGTGCTTTGCGTTAT
CACTTCAACGTGGTTTAGGAATGTACTAGTCAGAGGATGCCAGTGACTTTGAGGAGTGTG
TCAGAGGATACTCAGTGCAGGGTAGTCAAGATGTTATTTGAGTTCTTCAGTAATTGCCTT
AAAGCCATCTGTGTGAGCCAGGCCCCAGGCAGGGCAGCTCTGCAGGGGTCTCTGTGTGGT
GAAAGGAGATGAACCTTTGCTCAGGAAGCCTTCGGAAGGGGCCTTTCTGGCAGCTGTTTG
CCTGCCCTACAGACAGGTGAGAATTAGTTTAAACTGGATACTACTCAGCATGTTTTAAAA
TGTTTCCACTACATTGAGGTAAACTTTTTTAAAGTGGGCTACAAATAGCATTTTGCTGTA
GTTTTGCTCATTTCTACTTTTTTTTTCCTATTTCTTTAGTGATCAGAAGTTTATTGACAA
ATATTTGTGTAAACTCACTCAAGTCCATAACCCTTCCAATATCTGTGCCCCTGTTCTCAG
TTCCTCAGGAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               396-495, + strand, RNAz p=0.755892

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               396-495, + strand, RNAz p=0.755892

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-612, gnl|bosTau2|chr6 (39116800-39117427)
               

               
               1-612, gnl|canFam2|chr13 (50620284-50620859)
               

               
               1-612, gnl|dasNov1|scaffold_70973 (1131-1705)
               

               
               1-612, gnl|echTel1|scaffold_225419 (5491-5015)
               

               
               1-612, gnl|hg17|chr4 (56138680-56139226)
               

               
               1-612, gnl|Hg17|chr4 (56139308-56138703)
               

               
               1-612, gnl|loxAfr1|scaffold_10632 (43157-42573)
               

               
               1-612, gnl|mm7|chr5 (76145659-76146163)
               

               
               1-612, gnl|Mm7|chr5 (76146244-76145681)
               

               
               1-612, gnl|monDom2|scaffold_26 (19192359-19192933)
               

               
               1-612, gnl|oryCun1|scaffold_83016 (2470-2869)
               

               
               1-612, gnl|panTro1|chr3 (90503549-90503003)
               

               
               1-612, gnl|rheMac2|chr5 (73964123-73963575)
               

               
               1-612, gnl|rn3|chr14 (34261329-34260838)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr6 (39116800-39117427)
               

               
               1-612, gnl|canFam2|chr13 (50620284-50620859)
               

               
               1-612, gnl|dasNov1|scaffold_70973 (1131-1705)
               

               
               1-612, gnl|echTel1|scaffold_225419 (5491-5015)
               

               
               1-612, gnl|hg17|chr4 (56138680-56139226)
               

               
               1-612, gnl|Hg17|chr4 (56139308-56138703)
               

               
               1-612, gnl|loxAfr1|scaffold_10632 (43157-42573)
               

               
               1-612, gnl|mm7|chr5 (76145659-76146163)
               

               
               1-612, gnl|Mm7|chr5 (76146244-76145681)
               

               
               1-612, gnl|monDom2|scaffold_26 (19192359-19192933)
               

               
               1-612, gnl|oryCun1|scaffold_83016 (2470-2869)
               

               
               1-612, gnl|panTro1|chr3 (90503549-90503003)
               

               
               1-612, gnl|rheMac2|chr5 (73964123-73963575)
               

               
               1-612, gnl|rn3|chr14 (34261329-34260838)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               ute (0.132784)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)
               

               
               eep (0.122564)

	1-612, gnl\|bosTau2\|chr6 (39116800-39117427)
	1-612, gnl\|canFam2\|chr13 (50620284-50620859)
	1-612, gnl\|dasNov1\|scaffold_70973 (1131-1705)
	1-612, gnl\|echTel1\|scaffold_225419 (5491-5015)
	1-612, gnl\|hg17\|chr4 (56138680-56139226)
	1-612, gnl\|Hg17\|chr4 (56139308-56138703)
	1-612, gnl\|loxAfr1\|scaffold_10632 (43157-42573)
	1-612, gnl\|mm7\|chr5 (76145659-76146163)
	1-612, gnl\|Mm7\|chr5 (76146244-76145681)
	1-612, gnl\|monDom2\|scaffold_26 (19192359-19192933)
	1-612, gnl\|oryCun1\|scaffold_83016 (2470-2869)
	1-612, gnl\|panTro1\|chr3 (90503549-90503003)
	1-612, gnl\|rheMac2\|chr5 (73964123-73963575)
	1-612, gnl\|rn3\|chr14 (34261329-34260838)