Non-Coding RNA Search

Ss1.1-reep14c_h11.5

Sequence:


               
               CAGAGTTAGAGTGTTTGACTCTCATAATATCCATAAAGGAAGTCAGGGCCTGGAACCTTC
CCCTGAACCACCCCCCAGGCCTGTTGTTTTTATGCATCCCTTTCTGTGTGGGGTCCTAGT
GTTCTTTCCCAACAGGCAGGAGTAAGAGCCCTTGAGAACCTGGTCTGTGCTGGTGCTTTC
TGCTCATCCTTCAGGAATTTTAGAATGCCCCAAGGGGGCTGGGTGCTTGTGTTTCCCCTT
TTTCAGGAAAGTGACTGTGGACCTTACCCTCAGGTCTCGGGTTCCTTGTGGAACCTTGAG
GCTGGGGCTGGGGTTCCCACCTGGGTTGGTCTATCTTCAGAATCCTTCTCTTCACAGCAA
TGCCGAAGGAGATAAAATGGGAAGGAGAACCTTGACGATGGAGGGACACAGGTCATGAAG
AAGACCCCAAGTTTGGGCAGCGAGGGGAAGGGAGAGGGAAATAAAGGCTGAGACCATGGG
CAAAGTGCTAGTGAGCAGGTAGCCAGCCCTGCTCACCTGGTGCTGCTGCCTCCCAGGCTC
ATCCCTCTCCCCTCTGTCTTGCCAGCTGACAGCCACAGTGCTGAGGTCTGGAGCGGTGGT
CAGGATGGCGGAGGAACAGGAGTTCGCCCAGCTCTGCAAGTTGCCCACACAGCCCTCCCA
CCCTCACTGTGTCAGCAACACCTACCGGAGTGCACAGCACTCTCAGGCCCTTCTCCGGGG
CCTGCTGGCTCTCCGGGACAGCGGCATCCTTTTCGATGTCGTCCTGGTGGTGGAGGGGAG
GCACATCGAGGCCCATCGTATCCTGCTGGCTGCCTCCTGCGATTACTTCCGAGGCATGTT
TGCTGGGGGGCTGAAGGAGATGGAGCAGGAGGAGGTCCTGATCCACGGCGTGTCCTACAA
TGCCATGTGCCAAATCCTGCACTTCATATACACATCCGAGCTGGAGCTCAGCCTGAGCAA
TGTCCAGGAGACTCTGGTCGCCGCCTGCCAGCTTCAGATCCCAGAAATTATCCACTTCTG
CTGTGATTTCCTCACACCCTGGGTGGATGAGGACAACATCCTCGACGTCTACCGGCTGGC
CGAGCTCTTCGACCTGAGCCGCCTGACCGAGCAGCTGGACGCCTACATCCTTAAGAACTT
TGTGGCCTTCTCCCGGACTGACAAGTACCGCCAGCTGCCACTGGAGAAGGTCTATGCCCT
GCTGAGCAGCAACCGCCTGGAAGTGTCCTGCGAGACCGAGGTGTACGAGGGCGCCCTGCT
CTACCACTACTCCCTGGAGCAGGTGCAGGCCGACCGGCTCCCACTGCATGAGCCCCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGTTAGAGTGTTTGACTCTCATAATATCCATAAAGGAAGTCAGGGCCTGGAACCTTC
CCCTGAACCACCCCCCAGGCCTGTTGTTTTTATGCATCCCTTTCTGTGTGGGGTCCTAGT
GTTCTTTCCCAACAGGCAGGAGTAAGAGCCCTTGAGAACCTGGTCTGTGCTGGTGCTTTC
TGCTCATCCTTCAGGAATTTTAGAATGCCCCAAGGGGGCTGGGTGCTTGTGTTTCCCCTT
TTTCAGGAAAGTGACTGTGGACCTTACCCTCAGGTCTCGGGTTCCTTGTGGAACCTTGAG
GCTGGGGCTGGGGTTCCCACCTGGGTTGGTCTATCTTCAGAATCCTTCTCTTCACAGCAA
TGCCGAAGGAGATAAAATGGGAAGGAGAACCTTGACGATGGAGGGACACAGGTCATGAAG
AAGACCCCAAGTTTGGGCAGCGAGGGGAAGGGAGAGGGAAATAAAGGCTGAGACCATGGG
CAAAGTGCTAGTGAGCAGGTAGCCAGCCCTGCTCACCTGGTGCTGCTGCCTCCCAGGCTC
ATCCCTCTCCCCTCTGTCTTGCCAGCTGACAGCCACAGTGCTGAGGTCTGGAGCGGTGGT
CAGGATGGCGGAGGAACAGGAGTTCGCCCAGCTCTGCAAGTTGCCCACACAGCCCTCCCA
CCCTCACTGTGTCAGCAACACCTACCGGAGTGCACAGCACTCTCAGGCCCTTCTCCGGGG
CCTGCTGGCTCTCCGGGACAGCGGCATCCTTTTCGATGTCGTCCTGGTGGTGGAGGGGAG
GCACATCGAGGCCCATCGTATCCTGCTGGCTGCCTCCTGCGATTACTTCCGAGGCATGTT
TGCTGGGGGGCTGAAGGAGATGGAGCAGGAGGAGGTCCTGATCCACGGCGTGTCCTACAA
TGCCATGTGCCAAATCCTGCACTTCATATACACATCCGAGCTGGAGCTCAGCCTGAGCAA
TGTCCAGGAGACTCTGGTCGCCGCCTGCCAGCTTCAGATCCCAGAAATTATCCACTTCTG
CTGTGATTTCCTCACACCCTGGGTGGATGAGGACAACATCCTCGACGTCTACCGGCTGGC
CGAGCTCTTCGACCTGAGCCGCCTGACCGAGCAGCTGGACGCCTACATCCTTAAGAACTT
TGTGGCCTTCTCCCGGACTGACAAGTACCGCCAGCTGCCACTGGAGAAGGTCTATGCCCT
GCTGAGCAGCAACCGCCTGGAAGTGTCCTGCGAGACCGAGGTGTACGAGGGCGCCCTGCT
CTACCACTACTCCCTGGAGCAGGTGCAGGCCGACCGGCTCCCACTGCATGAGCCCCCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26326655|dbj|BAC27071.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26326655|dbj|BAC27071.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               639-758, - strand, RNAz p=0.529709
               

               
               995-1113, - strand, RNAz p=0.64189

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               639-758, - strand, RNAz p=0.529709
               

               
               995-1113, - strand, RNAz p=0.64189

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               84-831, gnl|bosTau2|chr17 (44522367-44521634)
               

               
               84-831, gnl|Hg17|chr22 (19168602-19167826)
               


               
               995-1320, gnl|bosTau2|chr17 (44516252-44515927)
               

               
               995-1320, gnl|Hg17|chr22 (19144420-19144095)
               

               
               995-1320, gnl|Mm7|chr16 (17326132-17326457)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-831, gnl|bosTau2|chr17 (44522367-44521634)
               

               
               84-831, gnl|Hg17|chr22 (19168602-19167826)
               


               
               995-1320, gnl|bosTau2|chr17 (44516252-44515927)
               

               
               995-1320, gnl|Hg17|chr22 (19144420-19144095)
               

               
               995-1320, gnl|Mm7|chr16 (17326132-17326457)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	639-758, - strand, RNAz p=0.529709
	995-1113, - strand, RNAz p=0.64189

	84-831, gnl\|bosTau2\|chr17 (44522367-44521634)
	84-831, gnl\|Hg17\|chr22 (19168602-19167826)

	995-1320, gnl\|bosTau2\|chr17 (44516252-44515927)
	995-1320, gnl\|Hg17\|chr22 (19144420-19144095)
	995-1320, gnl\|Mm7\|chr16 (17326132-17326457)