Non-Coding RNA Search

Ss1.1-reep14c_h7.5

Sequence:


               
               AAAAAAATAAATAAATAAATAAGCAATATATGTTCTGGTATAAATTTAAAATCATATTTT
AAATCCCAAGAATTTAGAGCATATTTATCTTGACTAGTTGTTTTTCATGTAGCTTTTGAT
AAATGGATGTTTAAAAAAGCTGAAGTTCATCTACATTCTGAGATTAACTTCTTTTAAACT
TAATTCTCTATTTAAAAAATCATCAGAAATGCTACTAGGTAAATTTTGGGGTCTTCAGAA
TTTCAGTCGTCATTATCCCTCAGAATGCTGATAATGTTGATAGGTAACACATAAATATGC
TAGGCATTGTTCTAGTATCGTTATATAAATTATCTCATTAAATTCTCACAACCACCTTTT
AAGGTAGATCCTGTTACTCTCTTGATATTAAAAATGACAAAACTGAGGCACACAGTAAAT
CTAAAATCATATTGCTAATTATGAGTGGATACAGTTTGATTCCAGAGCATAGTCCCTTAA
CCTTTACCTTTTCTTGATTTTTTTTCCTACCTCTCAGAATTGCTGAATGAATTTCCAAAC
AAATACATAATTGTAAGCAATGAGAATGCTTTGAAGTTAGACAGAGTTATAAACATCTAA
AAGTAGGGAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAATAAATAAATAAATAAGCAATATATGTTCTGGTATAAATTTAAAATCATATTTT
AAATCCCAAGAATTTAGAGCATATTTATCTTGACTAGTTGTTTTTCATGTAGCTTTTGAT
AAATGGATGTTTAAAAAAGCTGAAGTTCATCTACATTCTGAGATTAACTTCTTTTAAACT
TAATTCTCTATTTAAAAAATCATCAGAAATGCTACTAGGTAAATTTTGGGGTCTTCAGAA
TTTCAGTCGTCATTATCCCTCAGAATGCTGATAATGTTGATAGGTAACACATAAATATGC
TAGGCATTGTTCTAGTATCGTTATATAAATTATCTCATTAAATTCTCACAACCACCTTTT
AAGGTAGATCCTGTTACTCTCTTGATATTAAAAATGACAAAACTGAGGCACACAGTAAAT
CTAAAATCATATTGCTAATTATGAGTGGATACAGTTTGATTCCAGAGCATAGTCCCTTAA
CCTTTACCTTTTCTTGATTTTTTTTCCTACCTCTCAGAATTGCTGAATGAATTTCCAAAC
AAATACATAATTGTAAGCAATGAGAATGCTTTGAAGTTAGACAGAGTTATAAACATCTAA
AAGTAGGGAAGA

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               19-314, gnl|bosTau2|chr5 (27156918-27157213)
               

               
               19-314, gnl|canFam2|chr27 (14606294-14606121)
               

               
               19-314, gnl|dasNov1|scaffold_30187 (3379-3135)
               

               
               19-314, gnl|hg17|chr12 (41001548-41001793)
               

               
               19-314, gnl|Hg17|chr12 (41001838-41001571)
               

               
               19-314, gnl|oryCun1|scaffold_161496 (42186-42418)
               

               
               19-314, gnl|panTro1|chr10 (41595327-41595572)
               

               
               19-314, gnl|rheMac2|chr11 (39250166-39250411)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-314, gnl|bosTau2|chr5 (27156918-27157213)
               

               
               19-314, gnl|canFam2|chr27 (14606294-14606121)
               

               
               19-314, gnl|dasNov1|scaffold_30187 (3379-3135)
               

               
               19-314, gnl|hg17|chr12 (41001548-41001793)
               

               
               19-314, gnl|Hg17|chr12 (41001838-41001571)
               

               
               19-314, gnl|oryCun1|scaffold_161496 (42186-42418)
               

               
               19-314, gnl|panTro1|chr10 (41595327-41595572)
               

               
               19-314, gnl|rheMac2|chr11 (39250166-39250411)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               bla (0.124347)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)
               

               
               eep (0.122564)

	19-314, gnl\|bosTau2\|chr5 (27156918-27157213)
	19-314, gnl\|canFam2\|chr27 (14606294-14606121)
	19-314, gnl\|dasNov1\|scaffold_30187 (3379-3135)
	19-314, gnl\|hg17\|chr12 (41001548-41001793)
	19-314, gnl\|Hg17\|chr12 (41001838-41001571)
	19-314, gnl\|oryCun1\|scaffold_161496 (42186-42418)
	19-314, gnl\|panTro1\|chr10 (41595327-41595572)
	19-314, gnl\|rheMac2\|chr11 (39250166-39250411)