Non-Coding RNA Search

Ss1.1-reep15c_l4.5

Sequence:


               
               GGCTGGCACCGCTGACTGGCGGAGCATCTCGGAGGCCTCGCGCAGCTCCGCCAGGCCCCG
CCGAGCCTCCTCGCAGGCCGCGGCCAGCTCAGCGGCCCGGGCCTCCGCTGCATCCCGCGC
CTGGCCTAGCTCGGCAGCCGTGGCCCGCTGCTGCTCCCCGGCAGTCGTGGCTGCAGCCAG
CTGCTCTCGGAGCGCCTCCAGCTCCCGACTCAGCTCCAGCCGCGCCTCCTCTCGCCGGGC
CAGCTCTGCCCGCAGACCCCGGGCCTCTTCCTCCGCCAACAGTCGGCCGGCCTGAGCTTC
ATCCAGCTGGGCCGAGGCCGCCTCCAGCTCCCGGAGGCGGCTGTCCCGATCTCGGAGGTC
CTCCCGGGCCTGTTCCAGGGCTGCCCGAAGCTGGCCCATGTCACCTCCGCTGACGCCGCC
ACCCTCGGCCTCACGCACCCGCTCCCGAAGCCGGCCTGCCTCGGCCTCTGCGGCCTCACA
CTTGCCGTGGGCTGCCTCCAGCTCCGCAGCTGCCTCCCGCTCCCGCTGCCGGAGCGCTTC
CTCCAAGCTGCGGATCCTGGTTTCCAGCTCTGCCTGCAACTTCTCCGAGGCCTCAGCAGC
ACCAGGGTGTAGGACGGGGCCTGCAGAGACCCTTAGGGCAGTGGCCTCCACTCCCATGGC
TTCCGTTTTTGTGGTCTCTGTGTCCGTGAGCTCTCCCCCCACAGCATCCACTCCACTGGC
CTTCGTTTCTGGTTCCTCTGCTTTCATGTTTGTGGCCTCTGCTCTTGTGGCCTTTGGCTC
TGGGTTTCCTTCTAGAGATTTTGTTTCTGTGACCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGGCACCGCTGACTGGCGGAGCATCTCGGAGGCCTCGCGCAGCTCCGCCAGGCCCCG
CCGAGCCTCCTCGCAGGCCGCGGCCAGCTCAGCGGCCCGGGCCTCCGCTGCATCCCGCGC
CTGGCCTAGCTCGGCAGCCGTGGCCCGCTGCTGCTCCCCGGCAGTCGTGGCTGCAGCCAG
CTGCTCTCGGAGCGCCTCCAGCTCCCGACTCAGCTCCAGCCGCGCCTCCTCTCGCCGGGC
CAGCTCTGCCCGCAGACCCCGGGCCTCTTCCTCCGCCAACAGTCGGCCGGCCTGAGCTTC
ATCCAGCTGGGCCGAGGCCGCCTCCAGCTCCCGGAGGCGGCTGTCCCGATCTCGGAGGTC
CTCCCGGGCCTGTTCCAGGGCTGCCCGAAGCTGGCCCATGTCACCTCCGCTGACGCCGCC
ACCCTCGGCCTCACGCACCCGCTCCCGAAGCCGGCCTGCCTCGGCCTCTGCGGCCTCACA
CTTGCCGTGGGCTGCCTCCAGCTCCGCAGCTGCCTCCCGCTCCCGCTGCCGGAGCGCTTC
CTCCAAGCTGCGGATCCTGGTTTCCAGCTCTGCCTGCAACTTCTCCGAGGCCTCAGCAGC
ACCAGGGTGTAGGACGGGGCCTGCAGAGACCCTTAGGGCAGTGGCCTCCACTCCCATGGC
TTCCGTTTTTGTGGTCTCTGTGTCCGTGAGCTCTCCCCCCACAGCATCCACTCCACTGGC
CTTCGTTTCTGGTTCCTCTGCTTTCATGTTTGTGGCCTCTGCTCTTGTGGCCTTTGGCTC
TGGGTTTCCTTCTAGAGATTTTGTTTCTGTGACCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               472-591, - strand, RNAz p=0.7187

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               472-591, - strand, RNAz p=0.7187

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               511-635, + strand, RNAmicro p=0.999642
               

               
               516-619, - strand, RNAmicro p=0.998715

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               511-635, + strand, RNAmicro p=0.999642
               

               
               516-619, - strand, RNAmicro p=0.998715

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-814, gnl|bosTau2|chr7 (15951098-15950285)
               

               
               1-814, gnl|Hg17|chr19 (4168905-4167972)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-814, gnl|bosTau2|chr7 (15951098-15950285)
               

               
               1-814, gnl|Hg17|chr19 (4168905-4167972)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	511-635, + strand, RNAmicro p=0.999642
	516-619, - strand, RNAmicro p=0.998715

	1-814, gnl\|bosTau2\|chr7 (15951098-15950285)
	1-814, gnl\|Hg17\|chr19 (4168905-4167972)