Non-Coding RNA Search

Ss1.1-reep15c_o13.5

Sequence:


               
               TTTTGGCAAGCAGTTCACAAGGTGGGGACAAATTTGTGCTTAATATGTAGTCCATTCAAC
CAAGTGACTTGGTTCTCCTGCTAGGTAAAAGAGCAAATGGTGACTAGTTTAGCTCTCTAT
ATTAGTAACACAATGCACATCAAACAATACTCAGTGACATTCTTGACATTCTGCAACCCT
GATAGGGTTTTTCCCATGGGATAATCCATTATGGTGGCCAATAATTGCTACCATGGTTCA
GTGATTGTTTAGAAATAAAAGGTCAGATTTATTTCTTAACAGTCAGTAACAATCTTGAGA
GAATGTACTTGTTAAAATACATATATGGACATCATTCGGGTGGGGGGTTAATTTTGCTTC
ATTCTACTTATTTCAAGACGAATAGGCTTTTGCACTTTCAATGAGAAACCTGTGACTTAA
GTTGATTCTAACTAGGTTTGATTTGTAAGTAGCTATAATTTGTGAATCTTAGTGCAGAAG
GTCTTTTTAAAAGATCAGTCAAAAGGCTGGGGATTAAGTGGGTTTCAGTAATAACTCTAT
ACTGAGGTGCTTGCATTGTATTTCATAGTCTTTTCTTATTACAAACCAAAATTACTATTT
TTAATGAGAACGGTCTGAAGTTCAGAGGTGTGATGCCAGAATGTATTTTCGTACTGTTAG
GCCCTTGGAACAGATACCGGTGCTTTATGAAAGATGAAAGAAATGCAATGGGTACTCTTC
ACATAAGGTTGCAAAACCTACAAAGAATGCTCAATAGTCTCACTTTTCCCCAACGAACAG
ATGCGTGTGACTAGTTTTGGACTTATAACCTTAATGGGGGTTGCATGTTTCCTATTGTTA
ATCATTGTCAGCTGCAGTGACATGATCCACAGTCCTGCATTTACTGCCTTTCCCTTAATG
ATTTTGGACAGGTTCTAGAGAGCCGGGATGTTTGCTCTGGGCCTTTACTTGGTTTTGGCT
TTAGCTGATACTGTTTCAGTGCTCTGTCAGCTAGTGCAGTTCCCAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGGCAAGCAGTTCACAAGGTGGGGACAAATTTGTGCTTAATATGTAGTCCATTCAAC
CAAGTGACTTGGTTCTCCTGCTAGGTAAAAGAGCAAATGGTGACTAGTTTAGCTCTCTAT
ATTAGTAACACAATGCACATCAAACAATACTCAGTGACATTCTTGACATTCTGCAACCCT
GATAGGGTTTTTCCCATGGGATAATCCATTATGGTGGCCAATAATTGCTACCATGGTTCA
GTGATTGTTTAGAAATAAAAGGTCAGATTTATTTCTTAACAGTCAGTAACAATCTTGAGA
GAATGTACTTGTTAAAATACATATATGGACATCATTCGGGTGGGGGGTTAATTTTGCTTC
ATTCTACTTATTTCAAGACGAATAGGCTTTTGCACTTTCAATGAGAAACCTGTGACTTAA
GTTGATTCTAACTAGGTTTGATTTGTAAGTAGCTATAATTTGTGAATCTTAGTGCAGAAG
GTCTTTTTAAAAGATCAGTCAAAAGGCTGGGGATTAAGTGGGTTTCAGTAATAACTCTAT
ACTGAGGTGCTTGCATTGTATTTCATAGTCTTTTCTTATTACAAACCAAAATTACTATTT
TTAATGAGAACGGTCTGAAGTTCAGAGGTGTGATGCCAGAATGTATTTTCGTACTGTTAG
GCCCTTGGAACAGATACCGGTGCTTTATGAAAGATGAAAGAAATGCAATGGGTACTCTTC
ACATAAGGTTGCAAAACCTACAAAGAATGCTCAATAGTCTCACTTTTCCCCAACGAACAG
ATGCGTGTGACTAGTTTTGGACTTATAACCTTAATGGGGGTTGCATGTTTCCTATTGTTA
ATCATTGTCAGCTGCAGTGACATGATCCACAGTCCTGCATTTACTGCCTTTCCCTTAATG
ATTTTGGACAGGTTCTAGAGAGCCGGGATGTTTGCTCTGGGCCTTTACTTGGTTTTGGCT
TTAGCTGATACTGTTTCAGTGCTCTGTCAGCTAGTGCAGTTCCCAAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               180-291, + strand, RNAz p=0.982408

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               180-291, + strand, RNAz p=0.982408

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1008, gnl|bosTau2|chr3 (77680123-77681128)
               

               
               2-1008, gnl|Hg17|chr1 (35314786-35313765)
               

               
               2-1008, gnl|Mm7|chr4 (126478485-126479432)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1008, gnl|bosTau2|chr3 (77680123-77681128)
               

               
               2-1008, gnl|Hg17|chr1 (35314786-35313765)
               

               
               2-1008, gnl|Mm7|chr4 (126478485-126479432)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ova (0.129132)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	2-1008, gnl\|bosTau2\|chr3 (77680123-77681128)
	2-1008, gnl\|Hg17\|chr1 (35314786-35313765)
	2-1008, gnl\|Mm7\|chr4 (126478485-126479432)