Non-Coding RNA Search

Ss1.1-reep16c_h10.5

Sequence:


               
               ATGCCCGGCAGCTCTAGCAAACTGTTCCCATTCTTGGTTGAAAGGGCCGTGGTGAGATTT
TTGCTTCCTTTTGGTTTTGTTTGTTTAAATGGAAATTAGTTATTTTCTTCTGCTGGACAG
TATTAAATAGAGCAGGATGTTGAGTTAATCTGCTAGATTGCAGTACTAATGGTAGAGGTG
TAGTGTCTTCATATTAATATTATTTGGACTTATTTGAACAATAATGATAAAGAAGTGGTT
CATTACTTTTTAATTAATGCACTTTAATAAAGGTGGAATGGAAAGAACCCCAGAGAGCAA
AGTGCATTACTTAAAGATGCAGTATATACTCTTCTCATTTTTAAGCAGCACATATTTATT
AAAAGAAAAAAAAGTAATTTATGATTATTTAAAATAAAATTTAAAAGTAGAGTGACTGTC
AGGTTGAAGGACCTTCCATGTAGCTATCTTCCAGGGGGAGAGCCCCAGCGGCCTCACTCC
TCAAAGTCTGCACTGAGCCAGTTCAGTCAATAACGCGCCAGCCAGGCCAAGAAGGAGTGC
AGGATGCACCTGCCAAGCACAGAGCATCTCAGTCGGACTGGACCACAGCACTCCCCAGAG
CCTGCCTTTCCCTGCCCTTCCTCACTGTACTACCCCCCGGGGCTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCCCGGCAGCTCTAGCAAACTGTTCCCATTCTTGGTTGAAAGGGCCGTGGTGAGATTT
TTGCTTCCTTTTGGTTTTGTTTGTTTAAATGGAAATTAGTTATTTTCTTCTGCTGGACAG
TATTAAATAGAGCAGGATGTTGAGTTAATCTGCTAGATTGCAGTACTAATGGTAGAGGTG
TAGTGTCTTCATATTAATATTATTTGGACTTATTTGAACAATAATGATAAAGAAGTGGTT
CATTACTTTTTAATTAATGCACTTTAATAAAGGTGGAATGGAAAGAACCCCAGAGAGCAA
AGTGCATTACTTAAAGATGCAGTATATACTCTTCTCATTTTTAAGCAGCACATATTTATT
AAAAGAAAAAAAAGTAATTTATGATTATTTAAAATAAAATTTAAAAGTAGAGTGACTGTC
AGGTTGAAGGACCTTCCATGTAGCTATCTTCCAGGGGGAGAGCCCCAGCGGCCTCACTCC
TCAAAGTCTGCACTGAGCCAGTTCAGTCAATAACGCGCCAGCCAGGCCAAGAAGGAGTGC
AGGATGCACCTGCCAAGCACAGAGCATCTCAGTCGGACTGGACCACAGCACTCCCCAGAG
CCTGCCTTTCCCTGCCCTTCCTCACTGTACTACCCCCCGGGGCTCTCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               145-344, - strand, RNAz p=0.786766
               

               
               533-648, - strand, RNAz p=0.565487

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-344, - strand, RNAz p=0.786766
               

               
               533-648, - strand, RNAz p=0.565487

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-648, gnl|bosTau2|chr26 (15825554-15826183)
               

               
               1-648, gnl|Hg17|chr10 (105349679-105349028)
               

               
               1-648, gnl|Mm7|chr19 (47165902-47165294)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-648, gnl|bosTau2|chr26 (15825554-15826183)
               

               
               1-648, gnl|Hg17|chr10 (105349679-105349028)
               

               
               1-648, gnl|Mm7|chr19 (47165902-47165294)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eep (0.245128)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               clu (0.119646)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               clu (0.119646)

	145-344, - strand, RNAz p=0.786766
	533-648, - strand, RNAz p=0.565487

	1-648, gnl\|bosTau2\|chr26 (15825554-15826183)
	1-648, gnl\|Hg17\|chr10 (105349679-105349028)
	1-648, gnl\|Mm7\|chr19 (47165902-47165294)