Non-Coding RNA Search

Ss1.1-reep17c_b8.5

Sequence:


               
               CGGACCTCGAGGTTTCCTCCGGCAGAGCGCCCTGCAGTCGGTGGAAAGCGGCGGGGGAGC
GCGATGGCCGAGACGTGTACAGGATCCCGCGCCAGCGAGATCTTCACCACGCTGGAGTAC
GGACCCGTGCCGGAGAGCCACGCATGCGCACTGGCCTGGCTGGACACCCAGGACCGGCTC
TTGGGTCACTATGTTAACGGAAAATGGTTAAAGCCAGAACACCGGAGTTCAGTGCCTTGC
CAGGATCCCATCACAGGAGAGAAGCTGGCCAGTTGCCTGCAGGCACAGACTGAGGATGTG
GCAGAAGCCGTGGAAGCGGCCAGGGCCTCTCTGGAGAACTGGAGCACACTCCCTGGAGCC
TTTCGGGCCCAATACCTGACCAGGCTGGCCAAGATGATCCAGAAACACCAGCGGCTGTTC
TGGACCCTGGAGTCCCTGGTTACTGGACGGGCCGTTCGAGAAATTCGAGACAGGGATGTC
CCCCTGGCCCAGCAGTTGCTCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGACCTCGAGGTTTCCTCCGGCAGAGCGCCCTGCAGTCGGTGGAAAGCGGCGGGGGAGC
GCGATGGCCGAGACGTGTACAGGATCCCGCGCCAGCGAGATCTTCACCACGCTGGAGTAC
GGACCCGTGCCGGAGAGCCACGCATGCGCACTGGCCTGGCTGGACACCCAGGACCGGCTC
TTGGGTCACTATGTTAACGGAAAATGGTTAAAGCCAGAACACCGGAGTTCAGTGCCTTGC
CAGGATCCCATCACAGGAGAGAAGCTGGCCAGTTGCCTGCAGGCACAGACTGAGGATGTG
GCAGAAGCCGTGGAAGCGGCCAGGGCCTCTCTGGAGAACTGGAGCACACTCCCTGGAGCC
TTTCGGGCCCAATACCTGACCAGGCTGGCCAAGATGATCCAGAAACACCAGCGGCTGTTC
TGGACCCTGGAGTCCCTGGTTACTGGACGGGCCGTTCGAGAAATTCGAGACAGGGATGTC
CCCCTGGCCCAGCAGTTGCTCCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               381-504, + strand, RNAz p=0.568615

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               381-504, + strand, RNAz p=0.568615

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-154, gnl|bosTau2|chr18 (48596834-48596987)
               

               
               1-154, gnl|canFam2|chr1 (109933978-109933690)
               

               
               1-154, gnl|dasNov1|scaffold_240293 (3576-3265)
               

               
               1-154, gnl|echTel1|scaffold_319458 (40144-40466)
               

               
               1-154, gnl|hg17|chr19 (54648186-54648511)
               

               
               1-154, gnl|Hg17|chr19 (54648334-54648491)
               

               
               1-154, gnl|loxAfr1|scaffold_7655 (22227-21921)
               

               
               1-154, gnl|mm7|chr7 (41330399-41330101)
               

               
               1-154, gnl|Mm7|chr7 (41330273-41330119)
               

               
               1-154, gnl|monDom2|scaffold_105 (4145350-4145067)
               

               
               1-154, gnl|oryCun1|scaffold_140452 (5242-5571)
               

               
               1-154, gnl|panTro1|chr20 (52009968-52010294)
               

               
               1-154, gnl|rheMac2|chr19 (55709258-55709575)
               

               
               1-154, gnl|rn3|chr1 (95709051-95708744)
               


               
               381-504, gnl|bosTau2|chr18 (48603654-48603777)
               

               
               381-504, gnl|Hg17|chr19 (54654736-54654859)
               

               
               381-504, gnl|Mm7|chr7 (41323792-41323670)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-154, gnl|bosTau2|chr18 (48596834-48596987)
               

               
               1-154, gnl|canFam2|chr1 (109933978-109933690)
               

               
               1-154, gnl|dasNov1|scaffold_240293 (3576-3265)
               

               
               1-154, gnl|echTel1|scaffold_319458 (40144-40466)
               

               
               1-154, gnl|hg17|chr19 (54648186-54648511)
               

               
               1-154, gnl|Hg17|chr19 (54648334-54648491)
               

               
               1-154, gnl|loxAfr1|scaffold_7655 (22227-21921)
               

               
               1-154, gnl|mm7|chr7 (41330399-41330101)
               

               
               1-154, gnl|Mm7|chr7 (41330273-41330119)
               

               
               1-154, gnl|monDom2|scaffold_105 (4145350-4145067)
               

               
               1-154, gnl|oryCun1|scaffold_140452 (5242-5571)
               

               
               1-154, gnl|panTro1|chr20 (52009968-52010294)
               

               
               1-154, gnl|rheMac2|chr19 (55709258-55709575)
               

               
               1-154, gnl|rn3|chr1 (95709051-95708744)
               


               
               381-504, gnl|bosTau2|chr18 (48603654-48603777)
               

               
               381-504, gnl|Hg17|chr19 (54654736-54654859)
               

               
               381-504, gnl|Mm7|chr7 (41323792-41323670)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               eep (0.122564)

	1-154, gnl\|bosTau2\|chr18 (48596834-48596987)
	1-154, gnl\|canFam2\|chr1 (109933978-109933690)
	1-154, gnl\|dasNov1\|scaffold_240293 (3576-3265)
	1-154, gnl\|echTel1\|scaffold_319458 (40144-40466)
	1-154, gnl\|hg17\|chr19 (54648186-54648511)
	1-154, gnl\|Hg17\|chr19 (54648334-54648491)
	1-154, gnl\|loxAfr1\|scaffold_7655 (22227-21921)
	1-154, gnl\|mm7\|chr7 (41330399-41330101)
	1-154, gnl\|Mm7\|chr7 (41330273-41330119)
	1-154, gnl\|monDom2\|scaffold_105 (4145350-4145067)
	1-154, gnl\|oryCun1\|scaffold_140452 (5242-5571)
	1-154, gnl\|panTro1\|chr20 (52009968-52010294)
	1-154, gnl\|rheMac2\|chr19 (55709258-55709575)
	1-154, gnl\|rn3\|chr1 (95709051-95708744)

	381-504, gnl\|bosTau2\|chr18 (48603654-48603777)
	381-504, gnl\|Hg17\|chr19 (54654736-54654859)
	381-504, gnl\|Mm7\|chr7 (41323792-41323670)